Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0859 ATGGATACGCTCAAGAAACCCTTCAAAGGCAATGTATCTTTCAAGCACACACGGAGGATTTCTGCTGGCGGAGCCAGTACTACTACCGAATTCAATCACGAGGAGCTCCCCATTCTTCTCGATCACGAACTTGCCGATCATCATAATCGTCATAGGGATCGTCGCTCGCTGAACGATTGTGAACCGTCGGACCGCACGGAGGTAATTCTCAAGATCGATGATGGCGGTTCTTCGGCCGTTTCCAGATCTGTGGACTCTGCCGGCAATAATGGCGGGAAGGTTTGGCGGGAGCCCAGGTACGATTTCTGGAACAATGATGGAGTTGGGATTGGGGAACATGCGTGTAGGGCTAGTGGTGCGAGAGCGAGTGATATTGGTGATAGAAATGAGGATTTTGAATTTGTACAGCGTGGTTATGGTATGGAGGATCCACCGACGAAGCTGATTGGGGAGTTTCTTCATAAGCAGAAAATTAGAGGCGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGCTACGCCAGGATAGGATTATTCCTCCATTGGCGGAGTCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCGTTCCAGCAGGATTCGCCTGAAATTTTGAGCAATGAGTCGGTCCAAAGGCGGTACAGAGACTCTCGCGACTTGCAAGAAGAGTTCAAAGGAGGACAATCGCCATGGCAACAACCGCACCATGAACGTCGTGGATCTTCGACTATCTCTGCTGTTCAGAATGAATCTGTTGCTGAGGCTGTGAGATGCGCTTCTAACTTGTCTTTTCAGAGCGAGCTTTCGTTCCAGAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCGAGATTGATTGACCCGCCTGCAGAACCAGACCTGCTGTCTGGCCTCATTCCGAAATCGGGCCAGCTACGATCGGGGTTTCTTGGCAAGATTGACGACGACGACGACGATCCCTTTCTGGAAGAGGATCTTCCAGACGATTTTAAAAGGGGTAATTTCAGTGTTCTAACACTGCTGCAATGGGTGAGTTTGATTCTAATCACTGCGGCTTTAATTTGCACTCTTTCCATTCCCTATTTAAGGGCAAAGAGCCTGTGGGAGTTGTATATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGACGATTGGTTTCAGGTTGGGGGATTAGGATTGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGAGTTCTGTATTTTGTATATGGGGTTAGGAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCTCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAGTCAAACCAACAGCAATATACTCAATTATGTTAGGAAAATTTTAGTGTGTCTCTTGATGAGCACCTTGATTTGGCTAGTCAAAACCCTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTTGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTCTCAGGGCCACCCCTGATTGAAATTAAGAAGAATGAGGAAGAAGATGAGAGAATTGCAGATGAAGTCCAAAAATTACAGAATGCAGGGGTGACTATACCCCCTGATCTTAAGGCAGCAACCTTCTCTTCTGTAAAGAGTGGAAGGGTAATAGGCAGCGGACGGAACCAGAAAAGTTTTCGTGTTAGAAGTTCCAAATTCTCTCAAGCACTTGCCAAAAATGGAAACGATGGAATAACGATTGACCACTTGCACAAACTTAGTCCGAAGAATGTTTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGACATGGTAGCATTTCCACACTGGATGAGCAGATACCGGGGCCTTGTCCCGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCAGCAGCAAAGAAGATTTTTCAAAACGTGGCTCGGCGTGGGTTTAAGTATATATATCTGGATGACTTGATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACAATGAGTCTCTTTGAAGGAGCAATTGAAAACCGCAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTCGATAAACTGCACCATATGGTGAATGTGATATTCGGCATCCTTATATCAATTTTGTGGCTTATAGTACTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCGTTAGTTCTCAAATAGTGGTCGTGGCATTCATTTTTGGAAACACTTGCAAGACCATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCATTTGACGTTGGAGATAGATGTGAAATCGATGGAATGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACCTGAAGACTATAATCCCAAATAGTGTTCTTGCTACCAAATTCATCCACAACTTCTACCGTAGTCCTGACATGGGTGAATCTGTAGAATTCTGTGTCCATATAGCAACGCCAGCTGAGAAAATTGTGGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACACTGGTATCCTTCCCCTATGATTGTGTTCAAGGATGTAGAGGGTCTAAATAAGCTGAGATTGGCAGTTTGGCTGTCGCACAGAATCAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAGGTCGTGAAGGTCTGTCAAGAGCTTGACATTCAGTATCGTCTATTGCCCCTCGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCCCCATTGGCTTTCCATCTAACTAG 2862 44.58 MDTLKKPFKGNVSFKHTRRISAGGASTTTEFNHEELPILLDHELADHHNRHRDRRSLNDCEPSDRTEVILKIDDGGSSAVSRSVDSAGNNGGKVWREPRYDFWNNDGVGIGEHACRASGARASDIGDRNEDFEFVQRGYGMEDPPTKLIGEFLHKQKIRGETTLDMDLEMEELRQDRIIPPLAESPLSQTSKDLKVSFQQDSPEILSNESVQRRYRDSRDLQEEFKGGQSPWQQPHHERRGSSTISAVQNESVAEAVRCASNLSFQSELSFQRKSHLLRAKTKSRLIDPPAEPDLLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDDFKRGNFSVLTLLQWVSLILITAALICTLSIPYLRAKSLWELYIWKWEVMVLVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLISWHLLFNKRVESQTNSNILNYVRKILVCLLMSTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIKKNEEEDERIADEVQKLQNAGVTIPPDLKAATFSSVKSGRVIGSGRNQKSFRVRSSKFSQALAKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRHGSISTLDEQIPGPCPDDESTTEIKSEREAKAAAKKIFQNVARRGFKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILISILWLIVLGIASSKFFVFVSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMIVEEMNILTTVFLRYDNLKTIIPNSVLATKFIHNFYRSPDMGESVEFCVHIATPAEKIVAMKQRIISYIEGHKEHWYPSPMIVFKDVEGLNKLRLAVWLSHRINHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPLDINIRSLPSSAPPIGFPSN 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30985005 30989542 + Maker00014008 Lcy3g0859 628051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0859 953 MobiDBLite consensus disorder prediction 184 209 - -
Lcy3g0859 953 MobiDBLite consensus disorder prediction 210 224 - -
Lcy3g0859 953 SUPERFAMILY Sm-like ribonucleoproteins 772 831 IPR010920 -
Lcy3g0859 953 Coils Coil 513 533 - -
Lcy3g0859 953 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 943 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lcy3g0859 953 MobiDBLite consensus disorder prediction 182 243 - -
Lcy3g0859 953 Gene3D - 782 831 IPR023408 -
Lcy3g0859 953 FunFam Predicted mechanosensitive ion channel 782 831 - -
Lcy3g0859 953 Pfam Mechanosensitive ion channel, beta-domain 775 831 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0859 K22048 - - csv:101207426 1584.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0859 Lcy-Chr3:30985005 Lcy9g2295 Lcy-Chr9:47354698 5.77E-193 dispersed
Lcy3g0859 Lcy-Chr3:30985005 Lcy8g1282 Lcy-Chr8:39424517 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67