Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0859 ATGGATACGCTCAAGAAACCCTTCAAAGGCAATGTATCTTTCAAGCACACACGGAGGATTTCTGCTGGCGGAGCCAGTACTACTACCGAATTCAATCACGAGGAGCTCCCCATTCTTCTCGATCACGAACTTGCCGATCATCATAATCGTCATAGGGATCGTCGCTCGCTGAACGATTGTGAACCGTCGGACCGCACGGAGGTAATTCTCAAGATCGATGATGGCGGTTCTTCGGCCGTTTCCAGATCTGTGGACTCTGCCGGCAATAATGGCGGGAAGGTTTGGCGGGAGCCCAGGTACGATTTCTGGAACAATGATGGAGTTGGGATTGGGGAACATGCGTGTAGGGCTAGTGGTGCGAGAGCGAGTGATATTGGTGATAGAAATGAGGATTTTGAATTTGTACAGCGTGGTTATGGTATGGAGGATCCACCGACGAAGCTGATTGGGGAGTTTCTTCATAAGCAGAAAATTAGAGGCGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGCTACGCCAGGATAGGATTATTCCTCCATTGGCGGAGTCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCGTTCCAGCAGGATTCGCCTGAAATTTTGAGCAATGAGTCGGTCCAAAGGCGGTACAGAGACTCTCGCGACTTGCAAGAAGAGTTCAAAGGAGGACAATCGCCATGGCAACAACCGCACCATGAACGTCGTGGATCTTCGACTATCTCTGCTGTTCAGAATGAATCTGTTGCTGAGGCTGTGAGATGCGCTTCTAACTTGTCTTTTCAGAGCGAGCTTTCGTTCCAGAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCGAGATTGATTGACCCGCCTGCAGAACCAGACCTGCTGTCTGGCCTCATTCCGAAATCGGGCCAGCTACGATCGGGGTTTCTTGGCAAGATTGACGACGACGACGACGATCCCTTTCTGGAAGAGGATCTTCCAGACGATTTTAAAAGGGGTAATTTCAGTGTTCTAACACTGCTGCAATGGGTGAGTTTGATTCTAATCACTGCGGCTTTAATTTGCACTCTTTCCATTCCCTATTTAAGGGCAAAGAGCCTGTGGGAGTTGTATATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGACGATTGGTTTCAGGTTGGGGGATTAGGATTGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGAGTTCTGTATTTTGTATATGGGGTTAGGAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCTCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAGTCAAACCAACAGCAATATACTCAATTATGTTAGGAAAATTTTAGTGTGTCTCTTGATGAGCACCTTGATTTGGCTAGTCAAAACCCTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTTGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTCTCAGGGCCACCCCTGATTGAAATTAAGAAGAATGAGGAAGAAGATGAGAGAATTGCAGATGAAGTCCAAAAATTACAGAATGCAGGGGTGACTATACCCCCTGATCTTAAGGCAGCAACCTTCTCTTCTGTAAAGAGTGGAAGGGTAATAGGCAGCGGACGGAACCAGAAAAGTTTTCGTGTTAGAAGTTCCAAATTCTCTCAAGCACTTGCCAAAAATGGAAACGATGGAATAACGATTGACCACTTGCACAAACTTAGTCCGAAGAATGTTTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGACATGGTAGCATTTCCACACTGGATGAGCAGATACCGGGGCCTTGTCCCGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCAGCAGCAAAGAAGATTTTTCAAAACGTGGCTCGGCGTGGGTTTAAGTATATATATCTGGATGACTTGATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACAATGAGTCTCTTTGAAGGAGCAATTGAAAACCGCAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTCGATAAACTGCACCATATGGTGAATGTGATATTCGGCATCCTTATATCAATTTTGTGGCTTATAGTACTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCGTTAGTTCTCAAATAGTGGTCGTGGCATTCATTTTTGGAAACACTTGCAAGACCATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCATTTGACGTTGGAGATAGATGTGAAATCGATGGAATGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACCTGAAGACTATAATCCCAAATAGTGTTCTTGCTACCAAATTCATCCACAACTTCTACCGTAGTCCTGACATGGGTGAATCTGTAGAATTCTGTGTCCATATAGCAACGCCAGCTGAGAAAATTGTGGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACACTGGTATCCTTCCCCTATGATTGTGTTCAAGGATGTAGAGGGTCTAAATAAGCTGAGATTGGCAGTTTGGCTGTCGCACAGAATCAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAGGTCGTGAAGGTCTGTCAAGAGCTTGACATTCAGTATCGTCTATTGCCCCTCGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCCCCATTGGCTTTCCATCTAACTAG 2862 44.58 MDTLKKPFKGNVSFKHTRRISAGGASTTTEFNHEELPILLDHELADHHNRHRDRRSLNDCEPSDRTEVILKIDDGGSSAVSRSVDSAGNNGGKVWREPRYDFWNNDGVGIGEHACRASGARASDIGDRNEDFEFVQRGYGMEDPPTKLIGEFLHKQKIRGETTLDMDLEMEELRQDRIIPPLAESPLSQTSKDLKVSFQQDSPEILSNESVQRRYRDSRDLQEEFKGGQSPWQQPHHERRGSSTISAVQNESVAEAVRCASNLSFQSELSFQRKSHLLRAKTKSRLIDPPAEPDLLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDDFKRGNFSVLTLLQWVSLILITAALICTLSIPYLRAKSLWELYIWKWEVMVLVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLISWHLLFNKRVESQTNSNILNYVRKILVCLLMSTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIKKNEEEDERIADEVQKLQNAGVTIPPDLKAATFSSVKSGRVIGSGRNQKSFRVRSSKFSQALAKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRHGSISTLDEQIPGPCPDDESTTEIKSEREAKAAAKKIFQNVARRGFKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILISILWLIVLGIASSKFFVFVSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMIVEEMNILTTVFLRYDNLKTIIPNSVLATKFIHNFYRSPDMGESVEFCVHIATPAEKIVAMKQRIISYIEGHKEHWYPSPMIVFKDVEGLNKLRLAVWLSHRINHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPLDINIRSLPSSAPPIGFPSN 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30985005 30989542 + Maker00014008 Lcy3g0859 628051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0859 953 MobiDBLite consensus disorder prediction 184 209 - -
Lcy3g0859 953 MobiDBLite consensus disorder prediction 210 224 - -
Lcy3g0859 953 SUPERFAMILY Sm-like ribonucleoproteins 772 831 IPR010920 -
Lcy3g0859 953 Coils Coil 513 533 - -
Lcy3g0859 953 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 943 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lcy3g0859 953 MobiDBLite consensus disorder prediction 182 243 - -
Lcy3g0859 953 Gene3D - 782 831 IPR023408 -
Lcy3g0859 953 FunFam Predicted mechanosensitive ion channel 782 831 - -
Lcy3g0859 953 Pfam Mechanosensitive ion channel, beta-domain 775 831 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0859 Lcy-Chr3:30985005 Lcy9g2295 Lcy-Chr9:47354698 5.77E-193 dispersed
Lcy3g0859 Lcy-Chr3:30985005 Lcy8g1282 Lcy-Chr8:39424517 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0859 K22048 - csv:101207426 1584.7