Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0879 ATGTTATCGGAGTTGATGAACTTTTTGAGGGCCTGTTTTCGGCCGAGCTCCGATCGGTATGTGGCGGGGGATATCAGGGGGCGGCAGGCCGGGCTTCTGTGGTACAAAGACAGTGGACAACACTTGAATGGTGAATTCTCAATGTCTGTGGTTCAGGCCAACAATTTGCTCGAAGATCAGAGCCAGATTGAGTCAGGCAGTTTGAGCTCAGATGAGTCTGGTCCCAGAGGGACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCTGAAACTTCTCGGTATATCTGTGATCATCTCTTTCAGCATCTCAAGAGATTTGCTTCTGAGCAAGATTCAATGTCTGCGGATGTAATACGCAAGGCATTCCAGGCGACAGAAGAGGGTTTTCTTTCTATAGTCCGAAGACAATGGTCAACAAATCCACAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATCTGTAATGGGACTCTCTATGTTGCAAATTTAGGTGATTCACGTGCTGTTTTGGGTAGAGTAGTGAAAGCAACCGGTGAGGTTCTAGCCATTCAGTTATCAACAGAGCACAACGTTTCTAACGAATCTGTGAGGCAAGAGCTGCAATCTTTGCACCCTGAAGACTCACAAATTGTGGTTTTAAAGCATAATGTTTGGCGAGTAAAGGGCATAATACAGATATCCAGATCTATAGGCGATGTCTACTTGAAAAAAGCTGAGTTCAATAGAGAACCTCTGTATTTAAAGTTTCGAGTTCGGGAACCTTTCAGCAAGCCAATTTTGAGCTCTGAACCATCGATTTCTGAGATCCAGTTGAAGCCAGATGATCAATTTATTATATTTGCATCTGATGGGTTGTGGGAGCAGCTTAGCAATCAGGAAGCAGTCAATATAGGAAGTGCAAGAAGATTGGTCAGAGCTGCTCTTCAAGTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGACTTGAAGAAGATTGACCGTGGTGTTCGTCGCCATTTCCATGACGACATCACTGTGGTGGTTGTGTTTCTTGATACAAATCTGCTCTTCAGAGCCAGCTCCACGAAGAGCTTGAGTGTCTCGCTACGAGGAGGTGGAGTCAACCGGCTTCCTAACTCTCTAGCCCCTGTCACCACGCCCATGTAG 1152 45.66 MLSELMNFLRACFRPSSDRYVAGDIRGRQAGLLWYKDSGQHLNGEFSMSVVQANNLLEDQSQIESGSLSSDESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKRFASEQDSMSADVIRKAFQATEEGFLSIVRRQWSTNPQIAAVGSCCLVGVICNGTLYVANLGDSRAVLGRVVKATGEVLAIQLSTEHNVSNESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYLKFRVREPFSKPILSSEPSISEIQLKPDDQFIIFASDGLWEQLSNQEAVNIGSARRLVRAALQVAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDTNLLFRASSTKSLSVSLRGGGVNRLPNSLAPVTTPM 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31657179 31663092 - Maker00014437 Lcy3g0879 628071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0879 383 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Lcy3g0879 383 CDD PP2Cc 46 346 IPR001932 -
Lcy3g0879 383 Pfam Protein phosphatase 2C 65 316 IPR001932 -
Lcy3g0879 383 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
Lcy3g0879 383 FunFam Phosphatase 2C family protein 34 356 - -
Lcy3g0879 383 Gene3D - 33 353 IPR036457 -
Lcy3g0879 383 SMART PP2C_4 37 344 IPR001932 -
Lcy3g0879 383 PANTHER PROTEIN PHOSPHATASE 37 345 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy3g0879 383 SUPERFAMILY PP2C-like 49 347 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0591 Lcy-Chr1:5033129 Lcy3g0879 Lcy-Chr3:31657179 4.02E-207 dispersed
Lcy3g0879 Lcy-Chr3:31657179 Lcy6g2327 Lcy-Chr6:48069976 1.45E-198 dispersed
Lcy2g0412 Lcy-Chr2:3436845 Lcy3g0879 Lcy-Chr3:31657179 2.30E-06 transposed
Lcy3g0879 Lcy-Chr3:31657179 Lcy8g1268 Lcy-Chr8:39272682 2.76E-224 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0879 - - - 0.0