Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0895 ATGTCGAAAGAGGTCACGGAAGAGGGACAGTCCGGTCTCAGAAAGGACTACGTCGACCCACCGCCGGCGCCGCTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTCTACAGAGCCCTAATCGCCGAATTCATCGCCACTCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAGCAGACCAAGATTTGCGACGGCGTCGGAATCCTCGGAATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACCGCCGGAATCTCCGGCGGGCACATCAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCGGTGGCCTACATGTTGGCGCAGTGCGCCGGAGCCATCGTCGGCGTTGGCCTGGTCAAAGCTTTCATGAAGCATGATTATAACCAGCAGGGCGGCGGAGCCAACTCCGTTAGTTCTGGGTACAGTCGGGGCACGGCTCTTGGCGCTGAGATTATCGGGACTTTCGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGGAGCGCGCGTGACTCTCACATCCCCGTTTTGGCTCCATTGCCCATCGGCTTCGCCGTGTTCATGGTTCATCTGGCCACCATTCCGATCACCGGAACCGGAATCAACCCAGCCAGAAGCTTCGGCGCCGCCGTCATCTTCAACAGTGAGAAAGCCTGGAACGACCACTGGATCTTTTGGGTGGGTCCGTTCGTGGGAGCACTGGCGGCGGCGGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATAAAAGCTTTGGGATCATTCCGCAGCAACCCCACGAACTGA 843 58.84 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKICDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMLAQCAGAIVGVGLVKAFMKHDYNQQGGGANSVSSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31885171 31886808 - Maker00014063 Lcy3g0895 628087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0895 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lcy3g0895 280 Pfam Major intrinsic protein 31 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Lcy3g0895 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Lcy3g0895 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lcy3g0895 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g0895 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1664 Lcy-Chr1:17178138 Lcy3g0895 Lcy-Chr3:31885171 1.19E-10 dispersed
Lcy3g0895 Lcy-Chr3:31885171 Lcy8g1900 Lcy-Chr8:45259851 2.11E-151 dispersed
Lcy3g0895 Lcy-Chr3:31885171 Lcy8g1261 Lcy-Chr8:39184051 7.67E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0895 K09872 - csv:101209627 543.502