Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0912 ATGAACATCTTCCACCGCCCCCCGCCGTCCTCTTCCGCCGCCAAATGGCTCGGCTTAGTCTCCGCCGTCTGGGTCCAGTCTATCTCCGGCAACAACTACACCTTCTCCAACTACTCCACCGCTCTCAAATCCCTCATGCACCTCTCTCAACTCCAACTCAACAATCTCTCCGTCGCCAAAGACCTCGGCAAGGCCTTCGGCCTACTCGCCGGCCTCGCCTCCGACCGCCTCCCCACCTCCCTCCTCCTCCTCATCGGCTCCCTCGAAGGCCTCATCGGCTACGGCGCTCAATGGCTCGTCGTCAGTCAAAAAATCAACCCCCTCCCTTACTGGCAGATGTGTGTTTTTCTGTGTATGGGAGGGAACAGTACCACTTGGATGAACACCGCCGTGCTTGTCACTTGCCTTAGAAACTTCCGGCGAAACAGAGGCTCTGTTTCCGGCATTCTCAAAGGCTACGTCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTTCACTCTTTTCTCCAATAACCCCTCTTCTTTCCTGGCCCTCCTCGCTTTCGTCCCCTTCGCCGTTTGCCTCACCGCCGTCCTCTTCCTCCGCGAAATCCCCTTCTCCGCCGATAACGAAACAGAGGAATCCACATACTTCTGGATTCTCAACGCCGTCGCCACCGCCGTCGCCGTCAGTCTCTTGGCCTTCGATTCAATCCCAAATCCCACCACATCTCTATCGATTGGCAGTGATGAACAACATGGGACAGATCGGATTGGCGCTTGGATACGACGACGTTTCGAGCTTCGTCTCGCTGATGAGCATTTGGGGATTCTTTGGCCGGATTTTATCGGGATCGGCGTCGGAGCATTTCATCAAATTTCGATGTTTTTGTGCTGTTCATGGGATGACTTTAACAGCGGAGATTTGGCAAAGAATACTTTGTTGGGGAAGTGGAGGAAAGCAGGAATGCCAAGGCCACTATGGAACGCAGCTTCTCAAATTCTAATGGCAGTTGGCTACATTCTCCTAGCCATTGCCATGCCCGGTTCCTTACACATCGGCTCGGTTGTCGTTGGCATCTGCTACGGCGTTCGTCTCGCCATCACCGTCTCGACTGCTTCCGAAGTCTTTGGCCTCAAAAACTACGGCATGATCTACAATGTTCTGATCCTCAACCTCCCGCTCGGTTCATTCCTCTTCTCGGGGCTGCTGGCGGGGATCCTCTATGACATGGAGGCGATGAAGACCGAGGGAGGCGGGAATACGTGCGTGGGAGGGCATTGTTACAGGCTTGTGTTTGTGGTAATGGCTGGTGCAAGTGTGGTTGGGCTTGGCATGGACTTGCTTTTGTCATTTAGAACCAAGAGATTGTACTCCAAAATGAGGGCTGTAAACAGATAG 1383 53.87 MNIFHRPPPSSSAAKWLGLVSAVWVQSISGNNYTFSNYSTALKSLMHLSQLQLNNLSVAKDLGKAFGLLAGLASDRLPTSLLLLIGSLEGLIGYGAQWLVVSQKINPLPYWQMCVFLCMGGNSTTWMNTAVLVTCLRNFRRNRGSVSGILKGYVALSTAIFTDLCFTLFSNNPSSFLALLAFVPFAVCLTAVLFLREIPFSADNETEESTYFWILNAVATAVAVSLLAFDSIPNPTTSLSIGSDEQHGTDRIGAWIRRRFELRLADEHLGILWPDFIGIGVGAFHQISMFLCCSWDDFNSGDLAKNTLLGKWRKAGMPRPLWNAASQILMAVGYILLAIAMPGSLHIGSVVVGICYGVRLAITVSTASEVFGLKNYGMIYNVLILNLPLGSFLFSGLLAGILYDMEAMKTEGGGNTCVGGHCYRLVFVVMAGASVVGLGMDLLLSFRTKRLYSKMRAVNR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32321316 32327901 + Maker00014064 Lcy3g0912 628104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0912 460 CDD MFS_Mch1p_like 15 438 - -
Lcy3g0912 460 Gene3D MFS general substrate transporter like domains 14 209 IPR036259 -
Lcy3g0912 460 Pfam Nodulin-like 15 230 IPR010658 -
Lcy3g0912 460 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 236 - GO:0016020(PANTHER)
Lcy3g0912 460 SUPERFAMILY MFS general substrate transporter 9 450 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0912 Lcy-Chr3:32321316 Lcy5g0317 Lcy-Chr5:3031968 2.03E-40 dispersed
Lcy3g0912 Lcy-Chr3:32321316 Lcy8g1243 Lcy-Chr8:38966669 7.93E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0912 - - - 0.0