Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0933 ATGTGGCTGCAAAAAGGAAACAGTGTCAATGGCGGGAAGAAGGGAGGAGCAGCAGGAGGCGGAGGCGGAGGCAATGGGCTGGTGGCTGTCGGTATCGACAGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCCGCCGAGAATTTGCTGGGAAAGGGCCAAACTGTGATTTTAATCCATGTGGTTCAGAGACCTTCAAGTGCGGCTGCTTCTTTGATTGGTGGAGCCATTATCTGTAATGCCGATGGCAGTTTCACGGATGATTCCCCTCGTAAACAGCGGCTCGAGATGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACTCGCAAGGATATTCAATGTCTTGATGTTATATTGGAAGACACCGACGTGGTGAAAGCATTAACGGAATACGTCTCCTATGCTGCAATCGACAACTTGGTGCTTGGGGCGCCGTCGAAACATGGATTCATTAGGTTTAAGTCGTCAAGCATGGGGAGTAATGTGTCGAAAGGGGCACCGGATTTCTGCACTGTACATGTTATCTCGAAGGGGAAGGTGTCATCGGTGAAACATGCCACTCGTTTGGCTCCCTTTTCTTCCCCTCTACTAGACCATATACAGAAGTTATCTAAGCCGATCGTGAAGGGAACGATCACTCCTCGACATAAGTTCAATTTAAGAGATAGGACATCATTCAAGCCTCGCAGTTATCAAGATGAAACAATCAAGTCACCTTACTCTCATGGTGGAGAGAGAACTTCTATTACCAAATTTAGTGGAGGGTTCTCTGAGTCAGAATCCGACATATCCTTCATAAGCTCTGGTAGACCAAGCACAGAGCGTACTTCTTCTGTTGCATTTGACTACTCTGATTCAGCCCCCTCACGATTTTCGACTAGCTCAGAACAAAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCTCAGTCATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGAACATCATGTTCATGGTCATCTCAGAACGTGGATGACGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACCATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACTGCAAAGCAGAAGGCAATGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTCGCTCAAGAAGCTGCAATGGCCATTGCAGAGCAGGAGAGAGCGAGATGCCGAGCAGCAATGGAAGCAGCTGATGCAGCTAAGAGAATTGCGGAGTTTGAATCACATAAAAGAGCAAATCTAGAGATGAAAGCACTTAAAGAAGCAGAGGAAATGCAGAAAGCATTGAAAAATCTTGCTCAGAGTGACATTAGATACAGGAGATATTCAATTGATGAGGTTGAAGCCGCAACAGAACATTTTGCACAATCTCGAAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCTTTGTCGTCTTGATCACACATCGGTTGCAGTCAAGGTTTTGCGTCCCGATGCGACTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTTGGAGCATGCCCGGAATATGGCATTCTAGTGTACGAGTACATGTCGAATGGAAGTTTGGAGGATCGACTCTTCCGAAAGGGGAACACCCCTGTTATTCCTTGGCAATATAGGTTTCGAATTGCTGCCGAGATTGCTACCGGCCTTCTGTTTCTCCACCAGACAAAGCCAGAACCATTGGTGCACCGTGACCTCAAGCCAGCAAACATATTGCTAGACCACAACTATGTTAGCAAGATAAGCGATGTCGGTTTAGCTAGACTTCTACCTGCTGTGGCTGAAAATGTAACACAATGCTGCATGACTTCGGCCGCGGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGCTGCTTCAACTACTTACAGCCAAGCCGGCCATGGGGTTGGCTCACCATGTTGCTCGTTCTATTGAGAAGGGCACTTTTGCAAATTTGCTGGACCCAGGTGTGGCTGACTGGCCAGTGGAACAAGCCCTTTCCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGACGAAAAGACAGACCAGATCTTGGCAATGTTGTGTTGCCAGAACTTAACAAATTGAGAGAATTTGGTGACGAGAAAATGGAGCACATGGCATCAAGAGATAGTAGTGGATCTTTGAGCGGTTTTAGCCATGCCTCAACGGAACAGGATGTAATGAGTGACCCACAACTCATGAGCCCATCTAGTGCATCATCACAAGTAGGAGAATGA 2367 45.75 MWLQKGNSVNGGKKGGAAGGGGGGNGLVAVGIDREKGSQNALRWAAENLLGKGQTVILIHVVQRPSSAAASLIGGAIICNADGSFTDDSPRKQRLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDVVKALTEYVSYAAIDNLVLGAPSKHGFIRFKSSSMGSNVSKGAPDFCTVHVISKGKVSSVKHATRLAPFSSPLLDHIQKLSKPIVKGTITPRHKFNLRDRTSFKPRSYQDETIKSPYSHGGERTSITKFSGGFSESESDISFISSGRPSTERTSSVAFDYSDSAPSRFSTSSEQSFASLPFKPKWTDLSHLNDFSSVSDESCRTSCSWSSQNVDDAELEMRRLKLELKQTMEMYSTACKEALTAKQKAMELNNWRREEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKRIAEFESHKRANLEMKALKEAEEMQKALKNLAQSDIRYRRYSIDEVEAATEHFAQSRKIGEGGYGPVFLCRLDHTSVAVKVLRPDATQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLLPAVAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLLTAKPAMGLAHHVARSIEKGTFANLLDPGVADWPVEQALSFAKLALQCAELRRKDRPDLGNVVLPELNKLREFGDEKMEHMASRDSSGSLSGFSHASTEQDVMSDPQLMSPSSASSQVGE 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32749813 32754573 + Maker00014031 Lcy3g0933 628125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0933 788 Pfam Protein kinase domain 474 726 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0933 788 Gene3D Transferase(Phosphotransferase) domain 1 546 757 - -
Lcy3g0933 788 SUPERFAMILY Protein kinase-like (PK-like) 455 731 IPR011009 -
Lcy3g0933 788 Gene3D Phosphorylase Kinase; domain 1 440 545 - -
Lcy3g0933 788 Coils Coil 377 405 - -
Lcy3g0933 788 Coils Coil 430 454 - -
Lcy3g0933 788 SMART serkin_6 473 732 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0933 788 PANTHER OS02G0152300 PROTEIN 28 780 IPR051348 -
Lcy3g0933 788 MobiDBLite consensus disorder prediction 746 788 - -
Lcy3g0933 788 Coils Coil 339 359 - -
Lcy3g0933 788 Gene3D HUPs 27 178 IPR014729 -
Lcy3g0933 788 CDD STK_N 27 181 - -
Lcy3g0933 788 FunFam U-box domain-containing protein 51 546 745 - -
Lcy3g0933 788 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 445 545 - -
Lcy3g0933 788 Pfam Universal stress protein family 28 170 IPR006016 -
Lcy3g0933 788 ProSiteProfiles Protein kinase domain profile. 473 735 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0933 788 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 28 178 - -
Lcy3g0933 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0933 788 MobiDBLite consensus disorder prediction 234 280 - -
Lcy3g0933 788 MobiDBLite consensus disorder prediction 752 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0933 Lcy-Chr3:32749813 Lcy4g1566 Lcy-Chr4:39577499 5.43E-249 dispersed
Lcy9g1758 Lcy-Chr9:42782832 Lcy3g0933 Lcy-Chr3:32749813 2.16E-33 dispersed
Lcy3g0933 Lcy-Chr3:32749813 Lcy13g1359 Lcy-Chr13:31660266 4.00E-273 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65776 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0933 - - - 0.0