Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0949 ATGGGTGATACTGAAGACGCTCATACTGATAACATACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCACTTTCAGTCTAATTTTCTTGGAGATAATAATAGAAGAATTGGGATACCGCCTTGTCCCAACTCGCCGCAGATCCCACCAATCTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAGAGTTATAACCCAGTGCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGTGACTCCCCATCTACATCAAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATGCCAGTTCACATGCTCTGTTGCCTCCCTCGCCGTATATGAGGACCAATTCTCATAAGATGGGAGATGCTTTACCCCCTCGTACAGCCCATAGGCGGTCTAATAGTGACATTCCATTTGGATTATCTTCGATGATTCACTCATCTCCTCTTCTCCCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGCGGGCGTATTCAAGCCGGCCAGCCAGTTTGTTAAAAGAGAAGTTAGTTTGGAGAAAAGCATCGATAACAATTTGGAAGGAATGGGTGAAAGGAAGTCCGAAGGAGACACTGTGGATGATTTATTTTCTGCTTATATGAATTTGGACAGTATTGATTTGTTCAACTCTTCAGGGACCAACGACAAGAATGGTCTTGAGAATCGGGAGGATTTGGATAGTAGGGGTAGTGGGACAAAGACAGGGGGTGACAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAATGCCTGGATTGACTTCCTCTACTGAGAAGAGGGAAGGGATCAAACGGACTGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTATCTCCATGGATAGTTTCATGGGTAAATTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCCGGGCAACTTTCTCCAAACAATCTAGTTGATGGTAATTCAGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAGCTAGCTGAGATTGCTTTAACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGTAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACATTGTCTGCCCAACTCACACTTTTACAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGGTATTGACCCTTCTCTTTACTCTTTTCCTCCTATATTTCACAGGAAAGATATTGAGGAATTCATTTATACTTCCGCATTTATTTATCATTCTTTATCAAATGCGACAGCTCTAAATGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACGACTGAGATAAACGCGCAATCTCATCCCTCAAATGGCGTATTGGCTCAACCTTCTATGAATCACCATGGACTCCAGCTTCAGCTTCAGCAGCAACAGCAGCACCAACAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1800 44.17 MGDTEDAHTDNIRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQIPPISPYSQIPISRPMNQQSYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHALLPPSPYMRTNSHKMGDALPPRTAHRRSNSDIPFGLSSMIHSSPLLPFSGSGGLERSTSSKENAGVFKPASQFVKREVSLEKSIDNNLEGMGERKSEGDTVDDLFSAYMNLDSIDLFNSSGTNDKNGLENREDLDSRGSGTKTGGDSSDNEAESSVNEMPGLTSSTEKREGIKRTAGGDIAPTTRHYRSISMDSFMGKLQFGDESPKMPPTPPGVRPGQLSPNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGIDPSLYSFPPIFHRKDIEEFIYTSAFIYHSLSNATALNEALTAEVQRLKLATTEINAQSHPSNGVLAQPSMNHHGLQLQLQQQQQHQQQQQHMQQNGSATTKPESNQ 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32928711 32932427 - Maker00014038 Lcy3g0949 628141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0949 599 SUPERFAMILY Leucine zipper domain 415 466 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g0949 599 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 587 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy3g0949 599 MobiDBLite consensus disorder prediction 43 59 - -
Lcy3g0949 599 Gene3D - 414 467 - -
Lcy3g0949 599 MobiDBLite consensus disorder prediction 43 175 - -
Lcy3g0949 599 MobiDBLite consensus disorder prediction 290 314 - -
Lcy3g0949 599 Coils Coil 523 550 - -
Lcy3g0949 599 MobiDBLite consensus disorder prediction 352 371 - -
Lcy3g0949 599 MobiDBLite consensus disorder prediction 551 599 - -
Lcy3g0949 599 SMART brlzneu 411 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g0949 599 MobiDBLite consensus disorder prediction 83 115 - -
Lcy3g0949 599 Coils Coil 431 486 - -
Lcy3g0949 599 FunFam probable transcription factor PosF21 414 467 - -
Lcy3g0949 599 CDD bZIP_plant_RF2 416 465 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g0949 599 Pfam bZIP transcription factor 415 469 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g0949 599 MobiDBLite consensus disorder prediction 268 339 - -
Lcy3g0949 599 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 413 476 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g0949 599 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0949 Lcy-Chr3:32928711 Lcy9g0965 Lcy-Chr9:32325539 5.84E-37 dispersed
Lcy3g0949 Lcy-Chr3:32928711 Lcy10g1347 Lcy-Chr10:36623456 3.05E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19817 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0949 - - - 0.0