Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g0978 | ATGGAGTCCCTGAATCCTTCCCCTTTGTTCTTCTTCTCCCTCTTTTCTCTTCTCTTCTTCGTCGCTTTTCTTCGGAGTTTACGTCGTAAACTCCCCTATCCGCCAGGTCCTGGCGGACTACCCATCATTGGCAACATGTTGATGATGGACCAACTCACCCACCGTGGCCTCGCCGGTCTTGCCGCAATCTACGGTGGCCTATTCCACCTCCGCCTCGGCGTCCTCCACATGGTAGTCGTCTCCACGCCCGACATGGCACGTGAGTTCCTCCAAGTTCAAGACATCGCCTTCGCAAATAGGCCCGCAAACGTTGCAATCACGTACCTCACGTACGACCGGGCGGATATGGCCTTTGCCAATTACGGCCCCTTCTGGCGCCAAATGCGAAAGATTTGCGTCATGAAGCTCTTCAGCCGTCGTCGCGCCGAGTCATGGGCGTCAGTGCGCGACGAAGTCGACGCCGTGGTTCGAATTGTGTCGACGAAAATCGGCGAGCCGGTGAATATCGGGGAGCTGGTTTTCGGCCTAACGCGAAACATAACGTATAAGGCCGCGTTCGGATCGAGCTCGCACGAAGGACAAGACGAGTTCGTGAAGATCTTGCAAGAATTCTCTAAATTGTTTGGAGCTTTTAATATTGCAGATTTTTTGCCATGGTTGGGTTGGATTCATGCTAGAGAATTCAATGAAAGAATGGCAAAAGCTAGAAAAGCTCTTGATGTTTTCATTGATAGCATAATTGATGAACATATACAAAAGAAGACGAAGAAGAAAGAGGAAGAAGATGAAGAAGTTGATTCAGATATGGTGGATGAATTAATGGCGTTCTTTGCAGATGAGTCCTCCAGTAGCAATGAGTTTGATGATTCTTCACAATCAGCTCTTAAGCTTACCAGAGATAACATCAAAGCTCTAATCATGGACGTGATGTTCGGCGGAACAGAAACAGTAGCATCAGTGATAGAATGGGCAATGGCAGAACTAATGAAGAATCCTGAAGAGCTCAAAAAAGTCCAACAAGAACTCACACAGATCGTCGGATTAGATCGAAAACTCCACGAATCGGACCTCGAAAATCTCCCCTACTTGAAATCCGCCGTCAAAGAAACCCTCCGCCTCCATCCGCCGATTCCGCTCCTCCTCCACGAGACCGCCGTCGACACCGCCATCGCCGGCTACTTCATTCCCACCGGTTCCAGAGTTTGGATCAACGCCTGGGCGATCGGCCGGGACCAAACCGTCTGGGCCGAACCGGACCAATTCCGACCGGGGAGATTCCTAAACGGCACCGCTCCAGACTTCAAAGGGAGCGATTTCGAGTTCATTCCATTCGGGTCGGGTCGGCGATCTTGCCCCGGAATGCAACTCGGACTGTACGCTTGTGAGATGGCGGTGGCGAATCTTCTTCACTGCTTCTCCTGGAAATTGCCGAACCAAATGAAAGCTGATGAACTCGATATGAACGACTCGTTCGGACTCACCGCTCCGAGAGCGATTCGACTCGTTGCTGTACCGAGTTATCGGCTTAACTCGCCCGAGCTCGAATTGGAGGGGAAGAGACGGGAGGATGTGTGA | 1575 | 51.17 | MESLNPSPLFFFSLFSLLFFVAFLRSLRRKLPYPPGPGGLPIIGNMLMMDQLTHRGLAGLAAIYGGLFHLRLGVLHMVVVSTPDMAREFLQVQDIAFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVMKLFSRRRAESWASVRDEVDAVVRIVSTKIGEPVNIGELVFGLTRNITYKAAFGSSSHEGQDEFVKILQEFSKLFGAFNIADFLPWLGWIHAREFNERMAKARKALDVFIDSIIDEHIQKKTKKKEEEDEEVDSDMVDELMAFFADESSSSNEFDDSSQSALKLTRDNIKALIMDVMFGGTETVASVIEWAMAELMKNPEELKKVQQELTQIVGLDRKLHESDLENLPYLKSAVKETLRLHPPIPLLLHETAVDTAIAGYFIPTGSRVWINAWAIGRDQTVWAEPDQFRPGRFLNGTAPDFKGSDFEFIPFGSGRRSCPGMQLGLYACEMAVANLLHCFSWKLPNQMKADELDMNDSFGLTAPRAIRLVAVPSYRLNSPELELEGKRREDV | 524 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 33547074 | 33549959 | - | Maker00015231 | Lcy3g0978 | 628170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 85 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 364 | 382 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | P450 superfamily signature | 365 | 376 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | PANTHER | CYTOCHROME P450 84A1-RELATED | 7 | 512 | IPR053062 | GO:0004497(PANTHER) | |
| Lcy3g0978 | 524 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy3g0978 | 524 | Pfam | Cytochrome P450 | 34 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | FunFam | Cytochrome P450 84A1 | 26 | 507 | - | - | |
| Lcy3g0978 | 524 | Gene3D | Cytochrome P450 | 26 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | SUPERFAMILY | Cytochrome P450 | 34 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g0978 | 524 | CDD | CYP71-like | 64 | 501 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g0978 | Lcy-Chr3:33547074 | Lcy6g0943 | Lcy-Chr6:9701182 | 4.13E-244 | dispersed | |
| Lcy3g0978 | Lcy-Chr3:33547074 | Lcy1g0743 | Lcy-Chr1:6387256 | 6.30E-122 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g0978 | K09755 | - | csv:101217850 | 824.313 |