Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0981 ATGAAGATCCGTTGCGATGTTTGCGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGGTTCTCCCTACTTCAGCCGATCAAAACGGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAGTGCGACATTTCGATTCACGAAGCGAACGAACACACGCAGAAGCACAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACGATGCCGCCATGGATGTTAAAACTGGAAGCTCCCACGCTTGCAGCAAGAGGCCTAAAATGGCCGCCAACGAAATCTCGAGCTCTCATTCCACTGAAAAAGCTGCTCCGTCGACAAGCAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCATTTGGGAATCAAAATCTGGAGGGCCAACAAGAATCGATAGGCACCACCAGATTTGGCACCACCTTGAAATTTTTAGGTAACATTTCTCAAACTAGGTCTCGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGTTGATCAGATCATCAGCAGCTTTGGCTCTGAAACAATTCTGATCGGACACTCGGAACAGGCAAGCGAACAAGATTTACATACTGCAGTTTCAGAAAGCCGAAAGTTAGAATCAGGAAGCAAAATGTAG 927 48.54 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKTDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSTCFSYQTSSSSNGYDAAMDVKTGSSHACSKRPKMAANEISSSHSTEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAFGNQNLEGQQESIGTTRFGTTLKFLGNISQTRSRNGVGISMKTCRGEKMAVVDQIISSFGSETILIGHSEQASEQDLHTAVSESRKLESGSKM 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33596234 33601513 - Maker00014698 Lcy3g0981 628173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0981 308 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 MobiDBLite consensus disorder prediction 142 173 - -
Lcy3g0981 308 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy3g0981 308 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 221 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy3g0981 308 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lcy3g0981 308 FunFam B-box zinc finger protein 21 1 98 - -
Lcy3g0981 308 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 Gene3D Classic Zinc Finger 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0981 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0981 Lcy-Chr3:33596234 Lcy9g2238 Lcy-Chr9:46932300 8.08E-55 dispersed
Lcy13g1934 Lcy-Chr13:38364668 Lcy3g0981 Lcy-Chr3:33596234 1.65E-58 wgd
Lcy3g0981 Lcy-Chr3:33596234 Lcy8g1159 Lcy-Chr8:37954716 6.21E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1849 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.8 3.5e-82 302.8
Lcy2g0242 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.7 4.3e-56 216.1
Lcy2g0242 . 5 376 C2C2-CO-like Transcription Factor Family AT5G57660 51.2 9.0e-67 251.5
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT3G07650 58.2 1.4e-99 360.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 2.3e-89 326.6
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy3g0981 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.3 9.0e-53 204.9
Lcy8g1159 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 52.6 3.3e-47 186.4
Lcy1g0650 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 3.7e-50 195.3
Lcy6g0892 . 1 200 C2C2-CO-like Transcription Factor Family AT2G21320 51.7 3.6e-45 178.7
Lcy1g0650 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.1 7.5e-49 191.0
Lcy8g1175 . 1 216 C2C2-CO-like Transcription Factor Family AT4G38960 50.5 4.1e-47 185.3
Lcy6g0892 . 1 199 C2C2-CO-like Transcription Factor Family AT4G38960 53.9 5.4e-47 184.9
Lcy3g0981 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.1e-55 211.5
Lcy13g1934 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 7.1e-47 184.9
Lcy8g1159 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 54.1 1.2e-43 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19820 None None None None Lcy TF