Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0981 ATGAAGATCCGTTGCGATGTTTGCGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGGTTCTCCCTACTTCAGCCGATCAAAACGGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAGTGCGACATTTCGATTCACGAAGCGAACGAACACACGCAGAAGCACAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACGATGCCGCCATGGATGTTAAAACTGGAAGCTCCCACGCTTGCAGCAAGAGGCCTAAAATGGCCGCCAACGAAATCTCGAGCTCTCATTCCACTGAAAAAGCTGCTCCGTCGACAAGCAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCATTTGGGAATCAAAATCTGGAGGGCCAACAAGAATCGATAGGCACCACCAGATTTGGCACCACCTTGAAATTTTTAGGTAACATTTCTCAAACTAGGTCTCGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGTTGATCAGATCATCAGCAGCTTTGGCTCTGAAACAATTCTGATCGGACACTCGGAACAGGCAAGCGAACAAGATTTACATACTGCAGTTTCAGAAAGCCGAAAGTTAGAATCAGGAAGCAAAATGTAG 927 48.54 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKTDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSTCFSYQTSSSSNGYDAAMDVKTGSSHACSKRPKMAANEISSSHSTEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAFGNQNLEGQQESIGTTRFGTTLKFLGNISQTRSRNGVGISMKTCRGEKMAVVDQIISSFGSETILIGHSEQASEQDLHTAVSESRKLESGSKM 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33596234 33601513 - Maker00014698 Lcy3g0981 628173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0981 308 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 MobiDBLite consensus disorder prediction 142 173 - -
Lcy3g0981 308 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy3g0981 308 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 221 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy3g0981 308 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lcy3g0981 308 FunFam B-box zinc finger protein 21 1 98 - -
Lcy3g0981 308 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Lcy3g0981 308 Gene3D Classic Zinc Finger 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0981 Lcy-Chr3:33596234 Lcy9g2238 Lcy-Chr9:46932300 8.08E-55 dispersed
Lcy13g1934 Lcy-Chr13:38364668 Lcy3g0981 Lcy-Chr3:33596234 1.65E-58 wgd
Lcy3g0981 Lcy-Chr3:33596234 Lcy8g1159 Lcy-Chr8:37954716 6.21E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19820 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0981 - - - 0.0