Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0992 ATGCTCGTATCGCCTACGATCAAGAGCATTCAACTCGTCGCCTATTATTCTTCATCTTCATCCTCCAGATTCGTCTGTGTTCGATTCTTCTCAACCCCATCAAGATTCACAGATACGGCCCTCAAGATTAGCATCGGAGGAGCCTCTTGGAACGAACAATGGGCGATACCCGAGGAGGTTGCTGTCCACCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTGGTTCAGCTCATCATTCCCATCGAGTCTGCGCATCGCACTATCTCCTACCTCGGTGATCTCGGCCTTCTCCAGTTCAAAGATGTATGTACACCTTCCCAATCTCCCAGTTCTTTGTTTTCTGTCTGATTTTTGGTTTGCCGCGGAGAAATCCTGTTTGTTTTGCTTCACTGCGATGTTGCTCAATGCTGAGAAAAGCCCGTTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGCATTTTTTCAAGGAGCAGATGTTGAAGGCTGGACTGTCAAGCAAAAGCTCTGTGTCACAAGTTGATATCAACATAGACGACCTTGAGATCAAACTTGGTGAGCTTGAGGCTGAACTGGTTGAAATAAATGCTAATAGTGAGAAGCTACAACGTTCCTACAATGAACTTGTGGAGTATAAGCTTGTTTTGCAGAAGGCTGGTGAGTTTTTCAGTACAGCGCAAAGCAGTGCCCTAGAGCAGCAAAGAGAATTTGAATCACGGCGAGTTGGTGGAGATTCGATAGAAGTTCCATTGTTATTGGAACAAGAACCATCTGTGGATCAGTCCAAGCCGGTTAATTTGGGTTTTCTCTCTGGCCTTGTTCCTCGGGAAAAATCTATGGCATTTGAGAGAATACTATTTCGCGCTACCAGGGGTAATGTTTATCTGAAGCAGGCTGCAGTTGAGGATCCTGTTGCAGATCCTATTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCATTTGGTGCAAATCGTTACCCTTTTACTGAGGACCTGGGGAAACAAGCCCAAATGATTGCCGAGGTTTCTGGAAGACTGTCTGAGCTGAAGACTACAATTGATGTAGGGCTGATGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAACTTGGAATATCCTGGCGAGGAAGGAAAAATCCATATACCATATCTTGAACATGCTTAGCCTTGATGTAACCAAAAAATGTCTGGTGGCTGAGGGGTGGGGTCCTGTTTTTGCAACAAAGCAGATTCAAGATGCACTCCAGCGAGCAGCATCTGATTCCAACTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGCACCACCTACTTATTTTAAGACAAACAAATTCTCCACTGCTTTTCAAGAAATTGTCGATGCATATGGGGTGGCAAGGTATCAAGAAGCGAATCCTGGCGTATACACCATTGTCACTTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGTCTGTTACTTGCAACAATGTATTTTATATTACGGGAAAAGAAACTTTCTTCTCAGCTTGGTACTCATGATGTAACTCCTACTTATTGCTTGACTCATGGAGGTTTAAGAAATATGCTTAGCATGGCAGCGTCTACTATTGTGGCTACTAGTGGGAGCAATCAGTTCATGGTACTATGTGGCCACGGAATTCTTTGCTTTCACCTTGATGCTTTGCTTAAGAAACCTTTGCTCCGTTGGGCCAATGTCTTTGTGCCTTTGGAGGTTCCTCCAGAGGGCAGTTTTCTTTGGCACAAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCGATATACACAGGTCTGATTTATAATGAGTTCTTCTCAGTCCCATTTGGACTGTTTGGTCGCTCAGCATATGAATGTCGTAGTCCTGATTGCAGTGATTCTACTACTGTGGGGTTGATAAAGGTGGGTTCTACATATCCATTTGGCTTGGATCCTGTATGGCATGGTACTCGAAGTGAGCTTCCATTTCTCAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATCATATTAAGCTATTTCAATGCTACATTTTTCCGGAACAGCATCAATATCTGGTTCCAGTTCCTGCCACAGATGATATTTCTGAACAGCCTTTTCGGTTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGCTCAAATGCTGATCTGTACCACGTAATGATATACATGTTTCTGAGCCCCACCGATGATCTAGCTGAAAATCAGCTTTTTCCTGGACAGAAAAATGTTCAGATTGTGCTTCTCTTACTGGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTTCAAGGCCAGTCTTATGCGCCACTTCCAAGTGCTGATGATTCCCTTGAGTTGGATTCACATCATGATTCACATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTTGTGCATCAACTTATACATACCATTGAATTTGTGCTTGGAGCAGTATCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCACACTCAGAGTTGTCAAGCGTGTTTTACGACAAGGTTCTCGTTCTATCTGCGGGGTTCAACAACATTATAATCTTAATAGTTGGCATTATCGTTTTCATTTTCGCTACCGTTGGTGTGTTGCTATTGATGGAGACCCTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGATGGGTACAAATTCCATCCTTTCTCATTTGCGTTGCTCAATGAAGATGATGAGTAA 2952 43.46 MLVSPTIKSIQLVAYYSSSSSSRFVCVRFFSTPSRFTDTALKISIGGASWNEQWAIPEEVAVHPWICSAPSRCSWFSSSFPSSLRIALSPTSVISAFSSSKMYVHLPNLPVLCFLSDFWFAAEKSCLFCFTAMLLNAEKSPFQRTYAAQIKRCGEMARKLHFFKEQMLKAGLSSKSSVSQVDINIDDLEIKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSTAQSSALEQQREFESRRVGGDSIEVPLLLEQEPSVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVYLKQAAVEDPVADPISGEKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGRLSELKTTIDVGLMHRGNLLQTIGEHFETWNILARKEKSIYHILNMLSLDVTKKCLVAEGWGPVFATKQIQDALQRAASDSNSQVGPIFQVLLTTEAPPTYFKTNKFSTAFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATMYFILREKKLSSQLGTHDVTPTYCLTHGGLRNMLSMAASTIVATSGSNQFMVLCGHGILCFHLDALLKKPLLRWANVFVPLEVPPEGSFLWHKKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSPDCSDSTTVGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLSPTDDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKKQHEQRFQGQSYAPLPSADDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIIILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALLNEDDE 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33750832 33764606 + Maker00013830 Lcy3g0992 628184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0992 983 PANTHER VACUOLAR PROTON ATPASES 616 981 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lcy3g0992 983 Coils Coil 178 212 - -
Lcy3g0992 983 PIRSF ATP6V0A1 123 545 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lcy3g0992 983 PIRSF ATP6V0A1 603 983 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lcy3g0992 983 Pfam V-type ATPase 116kDa subunit family 135 539 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy3g0992 983 Pfam V-type ATPase 116kDa subunit family 618 975 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1870 Lcy-Chr8:45015690 Lcy3g0992 Lcy-Chr3:33750832 2.40E-114 transposed
Lcy13g1938 Lcy-Chr13:38412158 Lcy3g0992 Lcy-Chr3:33750832 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0992 K02154 - csv:101211364 760.37