Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1006 ATGATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACACTGCCGGGAACTGTCCTGATACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAGCCAATGAATCAGAGCTGTTTCAATAGGGTGGATTACGGTGGATTTCCGTCGCCGGTGGCTGTTCCGGCGGATCATCTCACCGGGTTTCCGGGGTTCGTGTGTGGCGGCGGCGGCGGTGTTGGTGGTGGTGGGTCGTCGTCACTTGTTGAGATGGTAATGGGGGCGGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCTGAAATGGGCAAGTTTGATCCTTCTCTGTTGCTGAATGCCAATGCTTTTGAGCTAAACTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCTCCGGCGGTGGTGGAGAAGATGGCCTCGGCGGCCGGAAGAGAGAGCTTCAAGAAAAGAAAACCTGAGAAAGTGACTGTGGAGGAAGATAACAACAACAACAACAGAGAGAAGAGGATCAAAGCAAGTGCAGACGAAGGGGAATTATCCAAAACCACAGATCAAAACAGCACCAAAAACAACCACTCAACCACCACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCTGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCACGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGATGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTCGAGTTCTTGTCCATGAAGTTAGCTGCAGTCAATCCAAGGTTCGACTTCAATGTCGAAGATCTCTTCACCAAAGAGGTATTTCCCCCTCCTTGCACCACAGCAAACTTCCCGGCGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCATCCTACTTACAATTCAATCCAAACAACCAACAAATGGTGTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAGAATTTCCTCGATTCATCCTGCCTCACCCAATTCCAAGGCTCTTCAGGGTGGGACGTGGATTTGCAGAATCTTTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAAGCAATATAAAGATGGAAATGTGA 1344 47.84 MMNRALPEMLHCLNTAGNCPDTLTVLERQRARLKWQQDQLLQQQPMNQSCFNRVDYGGFPSPVAVPADHLTGFPGFVCGGGGGVGGGGSSSLVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNANAFELNSSLSRTSSCPPAVAPAVVEKMASAAGRESFKKRKPEKVTVEEDNNNNNREKRIKASADEGELSKTTDQNSTKNNHSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRFDFNVEDLFTKEVFPPPCTTANFPAIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDVALRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGSNIKMEM 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33992068 33994855 - Maker00013937 Lcy3g1006 628198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1006 447 MobiDBLite consensus disorder prediction 221 255 - -
Lcy3g1006 447 Gene3D - 243 315 IPR036638 GO:0046983(InterPro)
Lcy3g1006 447 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 156 363 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy3g1006 447 FunFam Basic helix-loop-helix transcription factor 243 315 - -
Lcy3g1006 447 MobiDBLite consensus disorder prediction 192 220 - -
Lcy3g1006 447 Coils Coil 23 43 - -
Lcy3g1006 447 SMART finulus 252 302 IPR011598 GO:0046983(InterPro)
Lcy3g1006 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 314 IPR036638 GO:0046983(InterPro)
Lcy3g1006 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 296 IPR011598 GO:0046983(InterPro)
Lcy3g1006 447 MobiDBLite consensus disorder prediction 153 255 - -
Lcy3g1006 447 MobiDBLite consensus disorder prediction 155 191 - -
Lcy3g1006 447 Pfam Helix-loop-helix DNA-binding domain 250 297 IPR011598 GO:0046983(InterPro)
Lcy3g1006 447 CDD bHLH_AtBPE_like 236 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1006 Lcy-Chr3:33992068 Lcy7g0378 Lcy-Chr7:3190844 1.13E-42 dispersed
Lcy10g1539 Lcy-Chr10:39809189 Lcy3g1006 Lcy-Chr3:33992068 8.80E-50 transposed
Lcy11g1272 Lcy-Chr11:36003406 Lcy3g1006 Lcy-Chr3:33992068 2.43E-40 transposed
Lcy13g2290 Lcy-Chr13:41809983 Lcy3g1006 Lcy-Chr3:33992068 3.69E-39 transposed
Lcy2g0610 Lcy-Chr2:5215513 Lcy3g1006 Lcy-Chr3:33992068 6.07E-38 transposed
Lcy3g1332 Lcy-Chr3:39631989 Lcy3g1006 Lcy-Chr3:33992068 9.54E-41 transposed
Lcy5g0651 Lcy-Chr5:8040838 Lcy3g1006 Lcy-Chr3:33992068 1.68E-39 transposed
Lcy3g1006 Lcy-Chr3:33992068 Lcy8g1118 Lcy-Chr8:37412607 2.04E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19822 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1006 - - - 0.0