Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1021 ATGGCGGTTTCCGGTGGCAATTCGACGGAGATTCACCCCTCCGACGACTCTTCCTCTTCTGCTTCCAACACTTCTCTATCCAACTTGAAAGTCTACGCTGCCATCGGTATAATGGTTGCATGTGTCATTGCTGCCGGTGCTCTGATCTTCCTCTGTATCCGCAGGAATCGGGACTCGAGGAAGCACAAAATGCGGGTCAAGCACAGTTCCGGATTGATTCCCTTGGTCTCCAAGGAGATCGCCGAGATCAAAGAGCCCGATCGGACTGCGGATTGCGAGAAAGGGGAAGTGGTTAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAGTGGAGTAGGTATGAAGAGTCAAGAGAGCGACGTGTCCGGCGGCGGCCGGAGCGACGTGTCGGTGGAGGATCAGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAGCTGGAAATCGCGACCGATGGGTTTCTTCAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAATGTAGATTCTCTCTTAGAAACTGATGTGGCCTACTGGATGGTGCTTGGCTTGCTATATTTAAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGAAGGAGCTCAGAGGATGCTTGTGTATGAATATGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTTGGGCCTGTTAGTCCTCTAACATGGGATATCAGGATGAAGATTGCTCTTGGAACAGCAAAAGGTTTGGCCTATTTACATGAGGGTTTAGAACCGAAAGTCGTGCACCGTGATGTAAAATCCAGCAACATTCTTTTGGATAGAAAATGGAATGCAAAAGTGTCCGACTTTGGACTTGCAAAGCTCTTACAACCTGAAGCCACCTATGTAACTACTCGTGTCATGGGGACCTTTGGATATGTCTCCCCTGAGTATGCAAGTACAGGCATGCTTAACGAGGGAAGCGATGTATATAGTTTTGGTGTTCTACTTATGGAGATCATCACTGGGAGAAGCCCAATTGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGGCGTGGCGAAGAGGTTGTAGATCCATTGATCGAGATTCCGCCCTCTCCAAGAGCTTTAAAGCGAGTGTTGCTCGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTAGAAGCAGATGACTTTCCTTATCGTTCGGTAGGCACTGTTGCTCACCTATGCTCTTTAAGTTATTTGACTCGAGATTTTCTGATCGTCATCCTAGAGCTTCGTTCCGTGCGAGAGAAAGATAACCAGCCCTCGCGCTTAGACGTTCCCAATAAACTTCCATTGAAGCATGCTGGTATAGATGACATGGAATCAAGAAAGAGATAA 1542 47.86 MAVSGGNSTEIHPSDDSSSSASNTSLSNLKVYAAIGIMVACVIAAGALIFLCIRRNRDSRKHKMRVKHSSGLIPLVSKEIAEIKEPDRTADCEKGEVVRVENKKEIEFESGVGMKSQESDVSGGGRSDVSVEDQNLGWGRWYSLKELEIATDGFLQENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNNVDSLLETDVAYWMVLGLLYLKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCAEGAQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRALKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSVGTVAHLCSLSYLTRDFLIVILELRSVREKDNQPSRLDVPNKLPLKHAGIDDMESRKR 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34576337 34580086 + Maker00013632 Lcy3g1021 628213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1021 513 CDD STKc_IRAK 160 447 - -
Lcy3g1021 513 MobiDBLite consensus disorder prediction 1 23 - -
Lcy3g1021 513 SMART serkin_6 154 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1021 513 ProSiteProfiles Protein kinase domain profile. 154 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1021 513 Gene3D Transferase(Phosphotransferase) domain 1 251 455 - -
Lcy3g1021 513 FunFam Putative receptor-like serine/threonine-protein kinase 251 459 - -
Lcy3g1021 513 SUPERFAMILY Protein kinase-like (PK-like) 132 447 IPR011009 -
Lcy3g1021 513 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Lcy3g1021 513 Pfam Protein kinase domain 156 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1021 513 Gene3D Phosphorylase Kinase; domain 1 127 250 - -
Lcy3g1021 513 PANTHER OS01G0323000 PROTEIN 21 455 IPR052232 -
Lcy3g1021 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1021 Lcy-Chr3:34576337 Lcy4g0776 Lcy-Chr4:9268109 8.58E-143 dispersed
Lcy3g1021 Lcy-Chr3:34576337 Lcy11g1993 Lcy-Chr11:43535757 6.33E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65778 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1021 - - - 0.0