Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1080 ATGACTTCATCTTCTTCCAAGGATTCAGAACATCCTCAGATTCCCCTGCCACTCAAACCCATCCCCGGCAGCTATGGCTTCTCCATCTTCGGACCCATCAAGGATCGCTACGATTACTTCTACATTCAAGGCAGAGAGAAATTCTTCCGAACTCGAATGGAGAAATATGCCTCCACTGTTTTCCGGGTCAACATGCCGCCGGGCCCCTTCATCTCTTCCGATCCCAGAGTCGTCGTCCTTCTCGACGCCGTCAGCTTTCCGATCCTCTTCGACACCACTAAGGTCGAGAAACGGAACGTTCTCGATGGAACTTACATGCCGTCCTTGAACTTCACCGGCGGAATCCGCACCTGCGCCTTTCTGGACCCGTCGGAAACAGAGCACTCTGTTCTCAAGACCCTGTTCCTCAAATTTCTCGCCTCTCGTCACGATCAGTTCCTTCCTCTGTTCCGGAGCTCGGTTTCCGAGATGTTCGATAAGCTCGAAAGGGAATTGGGTGAGAAGAAAGTCGCCAATTTCAACCCCGTCGGCGATGCGGCGTCGTTTGATTTCATTTTCCACTTGCTCTCCGACCGAAGCCCCGATCAGAAATTCGCTGCAGAGGGACCGGGTTTGGTCGACCGGTGGCTCGCTATGCAGCTCGCTCCGTTGGCCACCGCCGGTCCGCCCAAATTCCTCACCTGCTTCGAAGATCTCATCATCCATACATTCCGTTTACCCTTCGCACTCGTCAAGAGTGCTTACAGGAAGGTTTACGACCAATTTTACGAGTCGTCGGGTTCGTTTCTAGACGAAGCAGAGAAACAGGGGATAGACAGAGAGAAAGCCTGTCACAATTTAGTGTTCCTCGCCGGATTCAACGCATACGCCGGAATGAAAGTGTTATTACCGATTATATTCTACTGGGTCGGATCCGCCGGTGAGGAGCTCCACCGGAAGCTCGCCGGCGAGATCAGAGCCGCCGTGAAGGAAGACGGAGGACTGACATTCGCCGCCTTGGAGAAGATGAGTCTGCTAAAATCCGTCGTGTACGAGGTTCTGAGAATCGACCCGCCAGTGCCGTACCAGTACGCGAAGGCGAAGCAAGACATGGTGATCGAGAGCCACGATTCTTCGTTCAAGATCAAGAAAGGGGAGATGCTTTTTGGGTATCAGCCGATCGCCACTAAAGATCCGAAGGTGTTTGAAAGGCCGGAGGAGTTCGTCGGCGAGAGGTTCGTCGGAGAGAAAGGGGAGAAGCTTTTGAAGTATGTTTACTGGTCGAATGGCCGGGAGACGGAGGCGCCGACGGCGGAGAACAAGCAGTGTCCGGCGAGGGATCTGGTGGTGCTCGTGTCAAGAGTAGTTTTGGTGGAACTGTTTCTCCGTTACGACACGTTCGCCGTCGAGGGGACTCGGTCGTCGTTGGGTTGGTCCGTTAAGGTCAAATCGTTGACCAAGGCGGCTGCCAAAGGTTAA 1458 53.77 MTSSSSKDSEHPQIPLPLKPIPGSYGFSIFGPIKDRYDYFYIQGREKFFRTRMEKYASTVFRVNMPPGPFISSDPRVVVLLDAVSFPILFDTTKVEKRNVLDGTYMPSLNFTGGIRTCAFLDPSETEHSVLKTLFLKFLASRHDQFLPLFRSSVSEMFDKLERELGEKKVANFNPVGDAASFDFIFHLLSDRSPDQKFAAEGPGLVDRWLAMQLAPLATAGPPKFLTCFEDLIIHTFRLPFALVKSAYRKVYDQFYESSGSFLDEAEKQGIDREKACHNLVFLAGFNAYAGMKVLLPIIFYWVGSAGEELHRKLAGEIRAAVKEDGGLTFAALEKMSLLKSVVYEVLRIDPPVPYQYAKAKQDMVIESHDSSFKIKKGEMLFGYQPIATKDPKVFERPEEFVGERFVGEKGEKLLKYVYWSNGRETEAPTAENKQCPARDLVVLVSRVVLVELFLRYDTFAVEGTRSSLGWSVKVKSLTKAAAKG 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35547422 35549398 - Maker00014768 Lcy3g1080 628272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1080 485 FunFam Allene oxide synthase, chloroplastic 16 483 - -
Lcy3g1080 485 Pfam Cytochrome P450 309 419 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1080 485 CDD CYP74 50 476 - -
Lcy3g1080 485 PRINTS E-class P450 group IV signature 389 407 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1080 485 PRINTS E-class P450 group IV signature 336 352 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1080 485 PRINTS E-class P450 group IV signature 373 387 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1080 485 Gene3D Cytochrome P450 16 484 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1080 485 SUPERFAMILY Cytochrome P450 15 466 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1080 485 PANTHER CYTOCHROME P450 26 21 457 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1080 Lcy-Chr3:35547422 Lcy4g0541 Lcy-Chr4:6503127 2.80E-130 dispersed
Lcy3g1080 Lcy-Chr3:35547422 Lcy3g1081 Lcy-Chr3:35565141 1.21E-266 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1080 K01723 - csv:101211574 832.402