Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1081 ATGGCATCGTCTTCTTCATCTGAACTTCCTCTGAAACCGATTCCCGGCGGCTATGGCTTCTCCGTCCTCGGCCCGCTCAAAGACCGCTACGACTACTTCTACTTCCAAGGAAAAGACGAATTCTTCCGATCCCGAATGACCAAATACCGCTCCACCGTCTTCCGCGCCAACATGCCGCCGGGCCCCTGCATCTCCTTCGACTCCAGAGTCGTCGTCGTCCTCGACGCCCTCAGCTTTCAGATCCTGTTCGACACCAGTAAAGTCGAAAAACGCAACGTTCTCGACGGAACTTACATGCCCTCCCTGTCCTTCACCGGCGATATTCGAACCTGCGCCTATTTGGACCCGTCGGAAACAGAGCACTCTCTTCTGAAAAAGCTTTTCCTCCGTTTTCTCGCCTCTCGCCACGACAGGTTTATCCCTCTGTTTCGGAACTCCTTGTCGGAGATGTTTATTAAGCTTGAAGATAAACTGGCGGAGAAGAAGAAGGTCGCCGATTTCAACCCGATCAGTGATGCGATGTCGTTCGATTACATGTTCCGGCTGCTCTCCGAAGGAATCCCTGATGCGAAATTGGCCGCCGATGGACCTGGGTTGTTCGATAAATGGCTGACCTTCCAGCTCGCTCCATTAGCTTCTGTTGGGTTGCCGAAAATCTTTTCAGTTTTTGAAGATCTCGTGATCCACACCATTCCCCTGCCTTTCTTTCTCGTCAAACAAGGTTACAGGAGGCTTTACGACGCGTTTTACTCCTCGTCTGGTTCGTTTCTGGACGAAGCGGAGAAACAGGGGATAGACAGAGAGAAAGCGTGTCACAACTTAGTGTTTCTGGCCGGATTCAACGCGTACGGCGGAATGAAAGTGCTTTTTCCGATTTTGCTGAAGTGGGTCGGCACCGCCGGGGTGGAGCTCCACCGGAAACTCGCCGACGAGGTCAGAGCCGTCGTGAAGGAAGAAGGGGGGCTGACTTTCGCCGCCTTGGAGAAGATGAGTCTGTTGAAATCCGTCGTGTATGAGGCTCTGAGGATCGAGCCGCCGGTGCCGTTCCAGTACGCGAAGGCGAAGGAGGACATGGTGATTCAGAGCCACGATTCGGCTTTCAAGATCAAGAAAGGGGAGATGATTTTTGGGTATCAGCCATTTGCCACAAAAGATCCGAAGGTGTTTGAGAATCCGGAGAAGTTCGTCGGCGATAGGTTCGTCGGAGAAGGCGAGAAACTTCTGAAGTATGTTTATTGGTCGAACGGCCGGGAGACGGAGGAGCCGACGCCGGAGAACAAACAGTGTCCCGGGAAGGATCTGGTGGTGCTGATGGGCAGGGTCATTCTGGTGGAATTCTTCCTCCGGTACGACACGTTTTCCGTCGACGTCGCCGAATTGCCGCTCGGCCCGTCGGTCAAGTTCAAGTCCTTGACCAAAGCTACTGTTTGA 1431 53.32 MASSSSSELPLKPIPGGYGFSVLGPLKDRYDYFYFQGKDEFFRSRMTKYRSTVFRANMPPGPCISFDSRVVVVLDALSFQILFDTSKVEKRNVLDGTYMPSLSFTGDIRTCAYLDPSETEHSLLKKLFLRFLASRHDRFIPLFRNSLSEMFIKLEDKLAEKKKVADFNPISDAMSFDYMFRLLSEGIPDAKLAADGPGLFDKWLTFQLAPLASVGLPKIFSVFEDLVIHTIPLPFFLVKQGYRRLYDAFYSSSGSFLDEAEKQGIDREKACHNLVFLAGFNAYGGMKVLFPILLKWVGTAGVELHRKLADEVRAVVKEEGGLTFAALEKMSLLKSVVYEALRIEPPVPFQYAKAKEDMVIQSHDSAFKIKKGEMIFGYQPFATKDPKVFENPEKFVGDRFVGEGEKLLKYVYWSNGRETEEPTPENKQCPGKDLVVLMGRVILVEFFLRYDTFSVDVAELPLGPSVKFKSLTKATV 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35565141 35567485 - Maker00014489 Lcy3g1081 628273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1081 476 PANTHER CYTOCHROME P450 26 14 450 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Lcy3g1081 476 Pfam Cytochrome P450 303 412 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1081 476 SUPERFAMILY Cytochrome P450 10 458 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1081 476 PRINTS E-class P450 group IV signature 383 401 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1081 476 PRINTS E-class P450 group IV signature 429 447 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1081 476 PRINTS E-class P450 group IV signature 330 346 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1081 476 PRINTS E-class P450 group IV signature 367 381 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1081 476 FunFam Allene oxide synthase, chloroplastic 9 476 - -
Lcy3g1081 476 CDD CYP74 43 469 - -
Lcy3g1081 476 Gene3D Cytochrome P450 5 476 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2017 Lcy-Chr13:39139344 Lcy3g1081 Lcy-Chr3:35565141 2.23E-177 dispersed
Lcy3g1081 Lcy-Chr3:35565141 Lcy4g0541 Lcy-Chr4:6503127 9.70E-123 dispersed
Lcy3g1080 Lcy-Chr3:35547422 Lcy3g1081 Lcy-Chr3:35565141 1.21E-266 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1081 K01723 - csv:101211324 821.231