Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1113 ATGGTGGAATCGAACCTCACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAAAAGAGGATGGAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAGCAACTCGATATCTCGTCATTCAGTGTGAGAAGGTCCAGCCGTTTTGCGGATAAGCCCCCTCCGAACTATAAGGAGGCAAGCTTTGAGCTATTCGTGCCCATTGAACCACTTCCAGGTGTCAGAAGGACTTATCAACGGAGAGATCTGTTGAGTCGAGTTTATGCTTCACACGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTGGTCTAGAATCTAGATACCCAAGTTTTGTGAAGCCCATGCTTCAGTCACATGTTACCGGGGGATTTTGGCTGGGTCTTCCAGTTCACTTTTGCAAGACACACCTTCCCCATGAGGATGAAATGGTTACTCTAGTGGACGAAGATGAAAATGAGTTCCAAACAAAATACCTTGCTGAGAAGACGGGTCTTAGCGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATACATCATCAGGGCATACAATTTAGAAGACAAAGAAGATACCAATGACATTGAGGATTCCGATGTCACCCAATTGGAAAAGAGTGGCAAAAAAACTACTAGATCAGCAAGTAAAGCAGGGCGTAAAATCAAGGCAAATAATTCTGAAGATAAAGCAGATAAAGGCGAGAATGCTGATGTCTCCCAATTGGAAAAAAGTGGCAAAAGAACCACTAGATCAGCAAGTAAAGGTAATTTGTTCCTTTTTCTGGCAGGGAAAAAGTAA 921 44.08 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQQLDISSFSVRRSSRFADKPPPNYKEASFELFVPIEPLPGVRRTYQRRDLLSRVYASHEERQYAIDRARDLQSGLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPHEDEMVTLVDEDENEFQTKYLAEKTGLSGGWRGFSIDHQLVDGDALVFHLTKPTEFKVYIIRAYNLEDKEDTNDIEDSDVTQLEKSGKKTTRSASKAGRKIKANNSEDKADKGENADVSQLEKSGKRTTRSASKGNLFLFLAGKK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36066553 36069024 + Maker00015149 Lcy3g1113 628305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1113 306 SMART B3_2 134 225 IPR003340 GO:0003677(InterPro)
Lcy3g1113 306 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 228 IPR044837 -
Lcy3g1113 306 CDD B3_DNA 132 223 IPR003340 GO:0003677(InterPro)
Lcy3g1113 306 MobiDBLite consensus disorder prediction 32 56 - -
Lcy3g1113 306 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677(InterPro)
Lcy3g1113 306 Coils Coil 6 33 - -
Lcy3g1113 306 SUPERFAMILY DNA-binding pseudobarrel domain 128 224 IPR015300 -
Lcy3g1113 306 MobiDBLite consensus disorder prediction 237 292 - -
Lcy3g1113 306 Pfam B3 DNA binding domain 134 224 IPR003340 GO:0003677(InterPro)
Lcy3g1113 306 Gene3D - 108 227 IPR015300 -
Lcy3g1113 306 MobiDBLite consensus disorder prediction 31 56 - -
Lcy3g1113 306 MobiDBLite consensus disorder prediction 237 252 - -
Lcy3g1113 306 MobiDBLite consensus disorder prediction 262 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2045 Lcy-Chr13:39407698 Lcy3g1113 Lcy-Chr3:36066553 8.70E-72 dispersed
Lcy13g2046 Lcy-Chr13:39412668 Lcy3g1113 Lcy-Chr3:36066553 8.40E-56 dispersed
Lcy3g1113 Lcy-Chr3:36066553 Lcy6g0531 Lcy-Chr6:4984061 9.53E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19829 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1113 - - - 0.0