Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1118 | ATGTTACAAACCCATTGGTGTATTTGTTTTTTGGATTCACATAAGGAAGTTGACTATAGAAAAATAGGGCTATATACATACACATATCACTTTAATAATTTAATACAAAATCCAGCACAAACAATTGGGAGATTTTGTCTTCCAAAAAAAAAAAAAAAAAAAACCAAAAAATTTCAAAATTTGTCTGTTCCCAAATCCTATATCCTTCCTCTTCCCCCCACTTCTTCTTTTCTTCTATTTAAACCCTCAATCCCCAACTCATTTCCCTCACTCTCACTTCACAAACACAACACAAAAAAAAAAAAAAAAACTCTCAACTTTGCCACACAAAAAGAACATCACTCACTCTCACACCTTTCATTATTTTTCATTTTTCCCTTCTTTATTCCAAAAACAAAAAGATCCCTTCAATTCTTAAGAGAGAAACAGAGAGATTGCTGCATTTTTTTTTTAATGGAGATTCTGTCTGTTACTCTGTACTTAACAACAATATTCCTCTTTCTTTCTGCTTTTTTCTTTTTCCTTTCATTTCTCAAGAGAAATAAAACCCAAAAATCCCAAAAATCTCTTAGGCTTCCTCCTGGTTCCATGGGATTGCCATGGATTGGAGAAACTTTGCAACTCTATTCTCAAGACCCCAACCTATTTTTCTCAGAAAAACAGAGAAGATATGGAGAAATTTTTAAGACCAATATTTTGGGATGTCCTTGTGTGATGTTGGCCAGCGCCGCCGCGGCCCGGTTCGTTCTGGTGACCAACGCCCATTTATTCCGCCCGACTTACCCCAAAAGCAAAGAGACGATGATCGGACCGGCCGCGCTTTTCTTCCACCAGGGAAATTACCATTCCAACCTCCGCAAGCTTGTCCAAAATTCTCTCTCTCTTGAACGCCTCAGAAACCTTGTTCCTCTCATCGAAGCCGCCGCCATTTCCGCCGCCCATTCTTGGGCCGCCGCCGGCCACGTCATCAACACCTTCCATGAAATGAAAAAGTTTTCTTTCGAGGTGGGAATTGTAGCGGTGTTCGGAAAGCTAGAAAGCCACTACAGCGAGAAGCTAAAAGAAAACTACTGCATATTAGACAAAGGCTACAACTCATTTCCAACCAGGCTTCCAGGAACAGTATATTCAAAAGCATTATCAGCGAGGAAGAAGCTGAGGGAGATTCTGGGAGAGATAATATTGGAGAGGAGAGAAAAAAGAGTAAGAGAGAGAGATTTAGTGGGTCATCTTTTGAACTTCAGAGATGAAAATGGCGAAGCTTTGAGTGAAGATCAGATTGCCGACAACATCATCGGAGTTCTCTTTGCGGCTCAGGACACCACCGCCAGTGTGCTCACGTGGATTCTCAAGTATCTTCATGACAATTTGAAGCTCTTTCAGACTGTCAAGGCAGAGCAGATGGAGATTTATAGAAGGAATGGAGAGGGGAAGATGCCTCTGTCTTGGGATCAGATTAAGGACATGCCCTTCACTCATAGGGTTGTATTAGAGAGCTTGAGGATGGCTAGCATCATATCCTTCACTTTTAGGGAGGCAGTGGTTGATGTGGAATATAAAGGGTACCTAATACCAAAGGGTTGGAAGGTCATGCCCTTGTTCAGGAATATTCATCACAACCCTGACTACTTCTCTGATCCTCAAATCTTTGATCCCTCTAGATTTGAGGTGGCTCCAAGGCCCAATACATTCATGCCATTTGGCAATGGAGTACACTCTTGCCCTGGAAATGAACTTGCCAAGCTGGAGATCCTCATCTTACTTCATCATCTCATTACCAAATTTAGGTAA | 1791 | 41.32 | MLQTHWCICFLDSHKEVDYRKIGLYTYTYHFNNLIQNPAQTIGRFCLPKKKKKKTKKFQNLSVPKSYILPLPPTSSFLLFKPSIPNSFPSLSLHKHNTKKKKKTLNFATQKEHHSLSHLSLFFIFPFFIPKTKRSLQFLREKQRDCCIFFLMEILSVTLYLTTIFLFLSAFFFFLSFLKRNKTQKSQKSLRLPPGSMGLPWIGETLQLYSQDPNLFFSEKQRRYGEIFKTNILGCPCVMLASAAAARFVLVTNAHLFRPTYPKSKETMIGPAALFFHQGNYHSNLRKLVQNSLSLERLRNLVPLIEAAAISAAHSWAAAGHVINTFHEMKKFSFEVGIVAVFGKLESHYSEKLKENYCILDKGYNSFPTRLPGTVYSKALSARKKLREILGEIILERREKRVRERDLVGHLLNFRDENGEALSEDQIADNIIGVLFAAQDTTASVLTWILKYLHDNLKLFQTVKAEQMEIYRRNGEGKMPLSWDQIKDMPFTHRVVLESLRMASIISFTFREAVVDVEYKGYLIPKGWKVMPLFRNIHHNPDYFSDPQIFDPSRFEVAPRPNTFMPFGNGVHSCPGNELAKLEILILLHHLITKFR | 596 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 36138000 | 36141044 | - | Maker00013728 | Lcy3g1118 | 628310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1118 | 596 | PRINTS | P450 superfamily signature | 437 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | P450 superfamily signature | 494 | 505 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | P450 superfamily signature | 574 | 585 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | P450 superfamily signature | 565 | 574 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | FunFam | Abscisic acid 8 | 182 | 596 | - | - | |
| Lcy3g1118 | 596 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 567 | 576 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy3g1118 | 596 | Pfam | Cytochrome P450 | 193 | 596 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | E-class P450 group I signature | 564 | 574 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | E-class P450 group I signature | 574 | 596 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | E-class P450 group I signature | 493 | 511 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | E-class P450 group I signature | 426 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | E-class P450 group I signature | 533 | 557 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PRINTS | E-class P450 group I signature | 221 | 240 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | Gene3D | Cytochrome P450 | 181 | 596 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | SUPERFAMILY | Cytochrome P450 | 187 | 596 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1118 | 596 | PANTHER | CYTOCHROME P450 26 | 191 | 595 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g2072 | Lcy-Chr13:39626229 | Lcy3g1118 | Lcy-Chr3:36138000 | 1.13E-188 | dispersed | |
| Lcy3g1118 | Lcy-Chr3:36138000 | Lcy6g0748 | Lcy-Chr6:7341124 | 9.60E-174 | dispersed | |
| Lcy3g1118 | Lcy-Chr3:36138000 | Lcy9g2109 | Lcy-Chr9:45787319 | 2.13E-219 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1118 | K09843 | - | csv:101219389 | 752.281 |