Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1119 | ATGGCCTCCACTACCAACGGACAAGAAGATCAGAACCAAGCTGGAAGGCACCAGGAAGTCGGCCACAAGAGCCTCTTGCAGAGCGATGCTCTGTATCAGTACATTCTTGAGACGAGCGTTTATCCGAGAGAGCCTGAATCGATGAAGGAATTAAGAGAATTGACTGCCAAACATCCATGGAACATCATGACGACATCGGCCGATGAAGGACAGTTCTTAAACATGCTTTTGAAGCTAATTAATGCGAAGAACACGATGGAGATTGGAGTATACACTGGCTATTCTCTTCTCGCTACTGCCCTAGCTCTTCCTGAAGACGGAAAGATTCTGGCTATGGATATTAACAGAGAAAATTACGAGCTCGGTTTGCCGGTGATTGAGAAAGCCGGCGTTGCTCACAAGATCGAGTTCAAGGAAGGCCCTGCTCTCCCTGTTCTTGACGACATGGTTGCCGATAAAAATAATCATGGAAGCTATGACTTCATTTTCGTGGATGCCGATAAAGACAACTACATCAATTACCATAAGAGGTTGATTGATCTCGTCAAAGTTGGTGGAGTGATCGGATATGACAACACACTATGGAATGGTTCGGTGGTGGCTCCACCCGACGCGCCGATGCGCAAATACGTCAGATATTACCGTGACTTCGTGATAGAGCTCAACAAGGCTCTGGCGGCCGACCCTAGAATTGAGATTTGTATGCTCCCAGTTGGCGATGGAATCACTCTCTGCCGTCGGGTTAAGTGA | 750 | 47.47 | MASTTNGQEDQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIEKAGVAHKIEFKEGPALPVLDDMVADKNNHGSYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVIELNKALAADPRIEICMLPVGDGITLCRRVK | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 36171050 | 36173125 | - | Maker00014633 | Lcy3g1119 | 628311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1119 | 249 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 28 | 247 | IPR029063 | - | |
| Lcy3g1119 | 249 | CDD | AdoMet_MTases | 87 | 188 | - | - | |
| Lcy3g1119 | 249 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lcy3g1119 | 249 | Pfam | O-methyltransferase | 37 | 248 | IPR002935 | GO:0008171(InterPro) | |
| Lcy3g1119 | 249 | PANTHER | O-METHYLTRANSFERASE-RELATED | 21 | 248 | IPR050362 | GO:0008757(PANTHER) | |
| Lcy3g1119 | 249 | Gene3D | Vaccinia Virus protein VP39 | 23 | 249 | IPR029063 | - | |
| Lcy3g1119 | 249 | FunFam | Caffeoyl-CoA O-methyltransferase 1 | 17 | 249 | - | - | |
| Lcy3g1119 | 249 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 24 | 248 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0978 | Lcy-Chr1:8628969 | Lcy3g1119 | Lcy-Chr3:36171050 | 1.89E-139 | dispersed | |
| Lcy3g1119 | Lcy-Chr3:36171050 | Lcy9g1066 | Lcy-Chr9:34474792 | 3.04E-79 | dispersed | |
| Lcy3g1119 | Lcy-Chr3:36171050 | Lcy6g0512 | Lcy-Chr6:4789456 | 1.07E-168 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1119 | K00588 | - | csv:101205648 | 494.197 |