Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1131 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCTGGCGCCGATCCGGCTGCCAATGGAGGGGCAAACCAGCATGTCACCACCTCCTTGTATGTTGGAGATCTTGACGTTAACGTCACCGATTCGCAGCTCTACGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCGAGGGCATTAGATGTTTTAAACTTCACTCCTTTGAATGGGAATCCTATTAGAGTTATGTATTCACATCGAGACCCTAGCATGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACCTGGACAAGGCAATTGATCACAAAGCATTGCACGATACATTTTCTGCATTTGGAAACATTCTATCCTGCAAGGTTGCTACAGATTCATCTGGCCAGTCTAAAGGGTTTGGTTTTGTGCAATTCGACAATGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTAAATGATAAGCAGGTGTTTGTGGGACCTTTCCTTCGTAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAATAATGTTTTTGTTAAGAATCTGTCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCTAGATGCTTCGGCTTTGTGAACTTTGAGAATGCAGATGATGCTGCTAGGTCTGTTGAAGCACTTAACGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAGTTAAAAAGTCGATTTGAACAGAGCGTAAAAGAAGCCGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATACCATTGACGATGATGAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACTTCATGCAAGGTTGTTATGCGAGACCCTAATGGAATAAGTAGAGGGTCTGGTTTTGTTGCATTTTCGACTCCTGAAGAGGCTGCAAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCTCAAATGCAGCCGATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTACCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCGAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCAAGGTCAAAGATCTGGTGGCAGGCGTGCCGGTGCCATTCAGCAAAACCAGCAGCCTGTTCCATTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCAATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGTATGCCGCCACGGGATGCTGTCCACCCTCAACCAATTCCTGTTGGGGCTTTGGCTTCTGCCCTTGCAAATGCAACTCCAGATCAGCAAAGAACGATGCTGGGAGAAAATCTATATCCACTTGTGGAACAGCTGGAGCCTGATAATGCAGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCTCCCGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACAGGCAATGCAGCTGATCAATTGGCTTCACTATCCCTGAATGACAACCTTGATTCCTAA 1947 46.12 MAQVPPQPQVPGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDNEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLSETTSEEDLKNMFGEFGPITSVVVMRDGDGKSRCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDTIDDDELKELFSAFGTITSCKVVMRDPNGISRGSGFVAFSTPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQNQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLNDNLDS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36332809 36337714 - Maker00014228 Lcy3g1131 628323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1131 648 CDD RRM3_I_PABPs 205 284 - -
Lcy3g1131 648 FunFam Polyadenylate-binding protein 547 629 - -
Lcy3g1131 648 Pfam RNA recognition motif 29 99 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 Pfam RNA recognition motif 117 184 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 Pfam RNA recognition motif 311 380 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 Pfam RNA recognition motif 208 276 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676(InterPro)
Lcy3g1131 648 CDD RRM1_I_PABPs 28 107 IPR034364 -
Lcy3g1131 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 FunFam Polyadenylate-binding protein 113 196 - -
Lcy3g1131 648 CDD RRM4_I_PABPs 308 387 - -
Lcy3g1131 648 Pfam Poly-adenylate binding protein, unique domain 558 623 IPR002004 GO:0003723(InterPro)
Lcy3g1131 648 Gene3D - 192 290 IPR012677 -
Lcy3g1131 648 MobiDBLite consensus disorder prediction 1 21 - -
Lcy3g1131 648 FunFam Polyadenylate-binding protein 14 112 - -
Lcy3g1131 648 Gene3D - 546 630 - -
Lcy3g1131 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 28 624 IPR006515 GO:0003723(InterPro)
Lcy3g1131 648 Gene3D - 116 188 IPR012677 -
Lcy3g1131 648 Gene3D - 291 396 IPR012677 -
Lcy3g1131 648 SMART poly_2 563 626 IPR002004 GO:0003723(InterPro)
Lcy3g1131 648 SMART rrm2_1 310 383 IPR003954 GO:0003676(InterPro)
Lcy3g1131 648 SMART rrm2_1 207 279 IPR003954 GO:0003676(InterPro)
Lcy3g1131 648 SMART rrm2_1 28 101 IPR003954 GO:0003676(InterPro)
Lcy3g1131 648 SMART rrm2_1 116 188 IPR003954 GO:0003676(InterPro)
Lcy3g1131 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 CDD RRM2_I_PABPs 113 189 IPR045305 -
Lcy3g1131 648 PANTHER RNA BINDING PROTEIN 21 207 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Lcy3g1131 648 FunFam Polyadenylate-binding protein 292 398 - -
Lcy3g1131 648 SUPERFAMILY PABC (PABP) domain 492 638 IPR036053 GO:0003723(InterPro)
Lcy3g1131 648 SUPERFAMILY RNA-binding domain, RBD 206 391 IPR035979 GO:0003676(InterPro)
Lcy3g1131 648 Gene3D - 15 115 IPR012677 -
Lcy3g1131 648 FunFam Polyadenylate-binding protein 197 291 - -
Lcy3g1131 648 SMART rrm1_1 207 279 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 SMART rrm1_1 310 383 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 SMART rrm1_1 28 101 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 SMART rrm1_1 116 188 IPR000504 GO:0003723(InterPro)
Lcy3g1131 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1131 Lcy-Chr3:36332809 Lcy5g0290 Lcy-Chr5:2729412 6.90E-14 dispersed
Lcy9g1238 Lcy-Chr9:36864929 Lcy3g1131 Lcy-Chr3:36332809 6.53E-07 dispersed
Lcy11g1268 Lcy-Chr11:35900441 Lcy3g1131 Lcy-Chr3:36332809 4.94E-31 transposed
Lcy5g0349 Lcy-Chr5:3516867 Lcy3g1131 Lcy-Chr3:36332809 5.93E-155 transposed
Lcy5g0559 Lcy-Chr5:6273830 Lcy3g1131 Lcy-Chr3:36332809 1.57E-09 transposed
Lcy3g1131 Lcy-Chr3:36332809 Lcy6g0511 Lcy-Chr6:4781282 0 wgd
Lcy3g1131 Lcy-Chr3:36332809 Lcy8g1046 Lcy-Chr8:36150793 1.43E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1131 K13126 - csv:101223017 1145.95