Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1154 ATGCGCCTTGTATTCCCACCGCAAGCAAAGCAAGCGCTCACTTCGAAACCTTCACCGCCGTTGACCAAACCACCCACCATGCCCACCGCCGTCTTCCGCTTCTCTGTTCTCTTCGTCGCTTTTTTTCAGCTCATCTCCGCCGCCGCAGGGTCTCACTCGACGGTGGAGTTCCTGCCGGGATTTGCAGGTCCTCTTCCCTTCGAACTGGAAACTGGATATGTGGGTGTCGGAGATTTTGAGGAAGTGCAATTGTTTTATTACTTTGTGAAATCCGAAGGAAATCCTCAGACGGATCCTCTGCTTTTTTGGCTCACCGGTGGCCCTGGTTGCTCTGCTTTGACTGCACTTGCCTATGAAGTTGATTTGCCGGTGGGCTCTGGATTTTCATATGGTAAAACTCCCCATTCTCTCGAGACAGGAGATTTTAGTCAAGTTCGCCATTCTATTCAATTTTTGAAAAAGTGGTTGCAAGTTGACCATCCAGAATTTATATCTAATCCTTTTTATGTGGGTGGAGATTCATACTGTGGTATGGTTGTTCCAGTTATTGCTCAAGAAATTTTACAAGAAAATAAGCAAGCTTTACCATTTGTAAATCTTGAGGGATACATATTGGGAAATCCTATGACCAATCGTGATTCATGGAAAAATTTTCAAATTCCTTATGCTCATAGGATGAGTCTCATTTCTGATGAATTATTCGAGTCATTGATCATCAGTTGCAAGGGAGAATATGTGAATATTGATCCAACCAATGTGGATTGCTTAAGACATTATGATGCGTACCAAAAGTGTGTTTCAAATCTCGAGAAAGGACATATTTTGTTGCCAAAATGTTCCTTTCGTTCTCCAAAGCAACAAGAAGATGCATTTGATCGAAGATCTCTGTACAACACTCCCAAATTACTGTTCCTTGATCCGAAGCCACCACTTCCTTCTCTTGATTGTCCTGTAAATTCTTCTCCTTCCGATCATGATAACGACGATGTTAATTCTCTTTTGTTTACTAAGATGAGAAGGTCTTACACGATGTTGAATTATGTTTGTTACGGAAGCATTGGAGAATGGACAAGATGTAAGATTCGAGGCCACTACAACTATGATATTGAGAGTGCTTTTCCTTATCATGTGAACCTTAGTTTTAAAGGATACCGGTCTTTAATCTATAGTGGGGATCATGATATGGTTGTATCGCATTTGGACACTCAAGCGTGGATTAGATCGTTAAATTATTCCATTGTTGATGACTGGAGACCTTGGTTTATCGTGGATCAAGTAGCCGGATATACAAGAACCTATGCAAATAAGATGACATTTGCAACCATAAAAGGTGGAGGTCACACAGCAGAATACACACAAAAAGAATGCAGTGTAGTGTTTAGTAGATGGATTAGTGGAGAATCCTTGTAA 1410 41.35 MRLVFPPQAKQALTSKPSPPLTKPPTMPTAVFRFSVLFVAFFQLISAAAGSHSTVEFLPGFAGPLPFELETGYVGVGDFEEVQLFYYFVKSEGNPQTDPLLFWLTGGPGCSALTALAYEVDLPVGSGFSYGKTPHSLETGDFSQVRHSIQFLKKWLQVDHPEFISNPFYVGGDSYCGMVVPVIAQEILQENKQALPFVNLEGYILGNPMTNRDSWKNFQIPYAHRMSLISDELFESLIISCKGEYVNIDPTNVDCLRHYDAYQKCVSNLEKGHILLPKCSFRSPKQQEDAFDRRSLYNTPKLLFLDPKPPLPSLDCPVNSSPSDHDNDDVNSLLFTKMRRSYTMLNYVCYGSIGEWTRCKIRGHYNYDIESAFPYHVNLSFKGYRSLIYSGDHDMVVSHLDTQAWIRSLNYSIVDDWRPWFIVDQVAGYTRTYANKMTFATIKGGGHTAEYTQKECSVVFSRWISGESL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36695243 36698865 + Maker00015163 Lcy3g1154 628346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1154 469 SUPERFAMILY alpha/beta-Hydrolases 55 467 IPR029058 -
Lcy3g1154 469 Gene3D alpha/beta hydrolase 49 119 IPR029058 -
Lcy3g1154 469 Gene3D alpha/beta hydrolase 120 290 IPR029058 -
Lcy3g1154 469 Pfam Serine carboxypeptidase 120 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy3g1154 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 181 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy3g1154 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 130 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy3g1154 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy3g1154 469 Gene3D - 343 469 - -
Lcy3g1154 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 52 119 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1154 Lcy-Chr3:36695243 Lcy9g2020 Lcy-Chr9:45078237 1.15E-220 dispersed
Lcy3g1154 Lcy-Chr3:36695243 Lcy3g1155 Lcy-Chr3:36709645 5.34E-15 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1154 K16296 - cit:102630827 486.493