Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1190 ATGGGATCGTGCCTCTCTGGGGACCGCAACAATCGGGCGATCACTTATTCTGAGCTCGCTTCCACTTCTCGTGATGATGGCCTTGTTACCCGAAGGAACTCCAAGAGGAAGATTAAGGGTTCTTCTCCCTCCAATGACTCTTCAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATCATGCGTCGCTCTTTACTCGGCAAGGCAAGAAAGGCATGAATCAGGATGCCATGATTGTCTGGGAGAATTTTGGTTCAAAAGAAGATACAATATTTTGCGGAGTCTTTGATGGACATGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTTAGAGATTCTCTTCCTCTAAAACTTAAGTGGGAATTGGATCCTACCAGAAAGGAAGAGCAAAATGATGCGAGATGTCAAGTCTCTCCACCAATGCTGAAGAACAAGGACTCTGGAACCTCTCATTGTGATCTTGGTCGTCAGGGCAGTTACAATGACATTTATGTCATGTTGAAAGAGTCTTTTCTGAAGGCTTTTAAGGCGATGGACAAAGAGCTTAAAATACACCCATATATTGATTGCTATACCAGTGGTACGACGTCAGTTGCTTTGGTTAAACAGGGTCAGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACCAGAGATAAATCTAACTCTCTCATTGCAGTTCAGTTGACTGTAGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATATTTGCTCTTCAAAATGAGCCTCAGATTTTTCGGGTTTGGCTTCCCAACACTGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTAAAAGACTTTGGCTTGATAGCGGTTCCTGATGTTTCTTATTATCATCTTACTGAGAAAGATGAATTTGTGGTATTGGCTACGGATGGGGTTTGGGATGTTCTCTCAAATGAAGAGGTGGTGGGAATTGTAGCTTCTTCTCCCAGACCATCCGCAGCTCGTAGCCTTGTGGACTCGGCTACTCGAGCATGGAGATTTAAGTACCCTACTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTTCCTGGACTCTAGTGAGAGTGCTGCAGTTACAGCTAAAGAGCAGGTAGAAGCGCATTCACTAAACCGAACCTCCAAACTAATGAGTTCACCAATGACATGGAAACTTAGAAGTTCTCTCAGCTTGCTTTCGTCCCTACTCTCTCTCCCGAAACCTACGATTAATGCTTCAGGCGAGTTTTGGAAATAA 1314 44.98 MGSCLSGDRNNRAITYSELASTSRDDGLVTRRNSKRKIKGSSPSNDSSREMSLHRVPGRMFLNGSTDHASLFTRQGKKGMNQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLKWELDPTRKEEQNDARCQVSPPMLKNKDSGTSHCDLGRQGSYNDIYVMLKESFLKAFKAMDKELKIHPYIDCYTSGTTSVALVKQGQDLIIGNVGDSRAVLGTRDKSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPQIFRVWLPNTDSPGLAMARAFGDFCLKDFGLIAVPDVSYYHLTEKDEFVVLATDGVWDVLSNEEVVGIVASSPRPSAARSLVDSATRAWRFKYPTAKVDDCAVVCLFLDSSESAAVTAKEQVEAHSLNRTSKLMSSPMTWKLRSSLSLLSSLLSLPKPTINASGEFWK 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37222537 37227852 + Maker00014238 Lcy3g1190 628382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1190 437 MobiDBLite consensus disorder prediction 25 51 - -
Lcy3g1190 437 SUPERFAMILY PP2C-like 68 378 IPR036457 -
Lcy3g1190 437 SMART PP2C_4 57 375 IPR001932 -
Lcy3g1190 437 ProSiteProfiles PPM-type phosphatase domain profile. 68 377 IPR001932 -
Lcy3g1190 437 MobiDBLite consensus disorder prediction 137 157 - -
Lcy3g1190 437 CDD PP2Cc 68 377 IPR001932 -
Lcy3g1190 437 Pfam Protein phosphatase 2C 76 352 IPR001932 -
Lcy3g1190 437 Gene3D - 63 379 IPR036457 -
Lcy3g1190 437 PANTHER PROTEIN PHOSPHATASE 51 376 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1443 Lcy-Chr2:17734902 Lcy3g1190 Lcy-Chr3:37222537 1.05E-155 dispersed
Lcy3g1190 Lcy-Chr3:37222537 Lcy4g0630 Lcy-Chr4:7493870 1.26E-136 dispersed
Lcy3g1190 Lcy-Chr3:37222537 Lcy4g1251 Lcy-Chr4:28606587 9.74E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1190 - - - 0.0