Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1199 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTCGAATCCGTCGACGACGATTGCGATTTCTACAGCGGCGATATGGACATGGGTATGGGCTATTACAGCGATGACGACGATCCTGACGCCGAGGACTTCGTCGAGGACGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATACCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGATGACATTATGAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTACTCCGCCACTTTAATTGGAGTGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAACTAGTTGGCTTGTTGGAAGCTCCTGTTGTACATGTCCTAAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGAGTGCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGTTGGGAAGGCTACATTAGTACATCAATTAACGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCCTCTTGCGGTGCTGTGGTTGATCAAGGCATGATTAATTCATTGGCCTCAAATGAAGACAGGGAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGTAATGGAAATTATGATGTATCTTGCCTCTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAATGCAAGCGACCAATTGAGAAAAACCAAGGATGCATGCACATGACTTGCACACCTCCCTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCGGAGAAAAGAAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATGTTTTCAAGGCGACCCCAGGCGGTCGCCCGGTGGCGCCTTTGGTCGCCTTTTCCATGGTGAAGGCGAGCGCCTCTCTAGGCAAAAAGCACTAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAACTCAGTGATATACATTGCACTCCTGAGTCTCAGCTAAAGTTCATTACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTTCCAGAACAGGAGCACGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAATCCGGATTAGAAAGGCTTCATCAATGCGCGGAAAAGGAACTGCTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTCACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCATGGAGCGAGCAGCGGCACAACAAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGCCGGGGTAAGGGAATCATTAGAACCTGCAGTTCGACCAGAAGCGGTGACAATGCCACTCATTGGTCATGCGAACACTGTACCTTTGTGAACACTAGATCTGCTACCACATGCGAGATGTGCCATGAACGCCATTGA 1851 44.84 MDSEDDLHYSTDVESVDDDCDFYSGDMDMGMGYYSDDDDPDAEDFVEDDTDDYFESRRREQNYTILNESDIRQRQEDDIMRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKLVGLLEAPVVHVLNARERTCGICFECYPNSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQGMINSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTCFQGDPRRSPGGAFGRLFHGEGERLSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSGRGKGIIRTCSSTRSGDNATHWSCEHCTFVNTRSATTCEMCHERH 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37333970 37344039 + Maker00015316 Lcy3g1199 628391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1199 616 CDD Rcat_RBR_ARI7-like 294 348 - -
Lcy3g1199 616 MobiDBLite consensus disorder prediction 548 568 - -
Lcy3g1199 616 Pfam IBR domain 293 333 - -
Lcy3g1199 616 SUPERFAMILY RING/U-box 209 278 - -
Lcy3g1199 616 SUPERFAMILY Ran binding protein zinc finger-like 589 614 IPR036443 -
Lcy3g1199 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Lcy3g1199 616 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 73 112 IPR048962 -
Lcy3g1199 616 Coils Coil 357 377 - -
Lcy3g1199 616 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
Lcy3g1199 616 Gene3D - 586 616 - -
Lcy3g1199 616 ProSitePatterns Zinc finger RanBP2-type signature. 593 612 IPR001876 -
Lcy3g1199 616 MobiDBLite consensus disorder prediction 548 589 - -
Lcy3g1199 616 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 91 391 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lcy3g1199 616 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270(InterPro)
Lcy3g1199 616 Gene3D - 267 547 - -
Lcy3g1199 616 ProSiteProfiles Zinc finger RanBP2 type profile. 585 616 IPR001876 -
Lcy3g1199 616 SMART zf_4 591 615 IPR001876 -
Lcy3g1199 616 CDD BRcat_RBR_ANKIB1 216 280 - -
Lcy3g1199 616 ProSiteProfiles Zinc finger RING-type profile. 140 184 IPR001841 -
Lcy3g1199 616 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Lcy3g1199 616 SUPERFAMILY RING/U-box 137 218 - -
Lcy3g1199 616 SMART ibrneu5 275 345 IPR002867 GO:0008270(InterPro)
Lcy3g1199 616 SMART ibrneu5 209 271 IPR002867 GO:0008270(InterPro)
Lcy3g1199 616 SUPERFAMILY RING/U-box 290 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1367 Lcy-Chr4:33195452 2.64E-57 dispersed
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1368 Lcy-Chr4:33207354 1.10E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1199 K11968 - csv:101223037 1129.01