Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1199 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTCGAATCCGTCGACGACGATTGCGATTTCTACAGCGGCGATATGGACATGGGTATGGGCTATTACAGCGATGACGACGATCCTGACGCCGAGGACTTCGTCGAGGACGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATACCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGATGACATTATGAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTACTCCGCCACTTTAATTGGAGTGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAACTAGTTGGCTTGTTGGAAGCTCCTGTTGTACATGTCCTAAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGAGTGCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGTTGGGAAGGCTACATTAGTACATCAATTAACGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCCTCTTGCGGTGCTGTGGTTGATCAAGGCATGATTAATTCATTGGCCTCAAATGAAGACAGGGAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGTAATGGAAATTATGATGTATCTTGCCTCTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAATGCAAGCGACCAATTGAGAAAAACCAAGGATGCATGCACATGACTTGCACACCTCCCTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCGGAGAAAAGAAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATGTTTTCAAGGCGACCCCAGGCGGTCGCCCGGTGGCGCCTTTGGTCGCCTTTTCCATGGTGAAGGCGAGCGCCTCTCTAGGCAAAAAGCACTAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAACTCAGTGATATACATTGCACTCCTGAGTCTCAGCTAAAGTTCATTACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTTCCAGAACAGGAGCACGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAATCCGGATTAGAAAGGCTTCATCAATGCGCGGAAAAGGAACTGCTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTCACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCATGGAGCGAGCAGCGGCACAACAAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGCCGGGGTAAGGGAATCATTAGAACCTGCAGTTCGACCAGAAGCGGTGACAATGCCACTCATTGGTCATGCGAACACTGTACCTTTGTGAACACTAGATCTGCTACCACATGCGAGATGTGCCATGAACGCCATTGA 1851 44.84 MDSEDDLHYSTDVESVDDDCDFYSGDMDMGMGYYSDDDDPDAEDFVEDDTDDYFESRRREQNYTILNESDIRQRQEDDIMRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKLVGLLEAPVVHVLNARERTCGICFECYPNSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQGMINSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTCFQGDPRRSPGGAFGRLFHGEGERLSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSGRGKGIIRTCSSTRSGDNATHWSCEHCTFVNTRSATTCEMCHERH 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37333970 37344039 + Maker00015316 Lcy3g1199 628391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1199 616 CDD Rcat_RBR_ARI7-like 294 348 - -
Lcy3g1199 616 MobiDBLite consensus disorder prediction 548 568 - -
Lcy3g1199 616 Pfam IBR domain 293 333 - -
Lcy3g1199 616 SUPERFAMILY RING/U-box 209 278 - -
Lcy3g1199 616 SUPERFAMILY Ran binding protein zinc finger-like 589 614 IPR036443 -
Lcy3g1199 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Lcy3g1199 616 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 73 112 IPR048962 -
Lcy3g1199 616 Coils Coil 357 377 - -
Lcy3g1199 616 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
Lcy3g1199 616 Gene3D - 586 616 - -
Lcy3g1199 616 ProSitePatterns Zinc finger RanBP2-type signature. 593 612 IPR001876 -
Lcy3g1199 616 MobiDBLite consensus disorder prediction 548 589 - -
Lcy3g1199 616 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 91 391 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lcy3g1199 616 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270(InterPro)
Lcy3g1199 616 Gene3D - 267 547 - -
Lcy3g1199 616 ProSiteProfiles Zinc finger RanBP2 type profile. 585 616 IPR001876 -
Lcy3g1199 616 SMART zf_4 591 615 IPR001876 -
Lcy3g1199 616 CDD BRcat_RBR_ANKIB1 216 280 - -
Lcy3g1199 616 ProSiteProfiles Zinc finger RING-type profile. 140 184 IPR001841 -
Lcy3g1199 616 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Lcy3g1199 616 SUPERFAMILY RING/U-box 137 218 - -
Lcy3g1199 616 SMART ibrneu5 275 345 IPR002867 GO:0008270(InterPro)
Lcy3g1199 616 SMART ibrneu5 209 271 IPR002867 GO:0008270(InterPro)
Lcy3g1199 616 SUPERFAMILY RING/U-box 290 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1199 K11968 - - csv:101223037 1129.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1367 Lcy-Chr4:33195452 2.64E-57 dispersed
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1368 Lcy-Chr4:33207354 1.10E-97 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1087 . 164 590 ARIADNE family AT4G34370 72.0 1.9e-183 639.4
Lcy8g1087 . 58 542 ARIADNE family AT2G16090 77.4 1.0e-225 780.0
Lcy8g1087 . 38 543 ARIADNE family AT3G27710 61.6 4.0e-183 638.6
Lcy8g1087 . 44 522 ARIADNE family AT3G27720 54.7 5.7e-144 508.4
Lcy3g1199 . 61 560 ARIADNE family AT1G05890 70.2 5.7e-215 744.6
Lcy4g1368 . 112 258 ARIADNE family AT1G05890 70.1 2.3e-54 211.1
Lcy4g1367 . 704 806 ARIADNE family AT1G05890 79.8 2.6e-50 197.6
Lcy4g1363 . 774 866 ARIADNE family AT1G05890 73.1 5.4e-40 163.3
Lcy3g1199 . 16 613 ARIADNE family AT1G65430 66.9 2.6e-241 832.0
Lcy4g1368 . 112 314 ARIADNE family AT1G65430 70.4 6.4e-75 279.3
Lcy4g1367 . 701 807 ARIADNE family AT1G65430 80.5 4.1e-53 206.8
Lcy4g1363 . 773 866 ARIADNE family AT1G65430 85.1 1.7e-46 184.9
Lcy4g1363 . 18 133 ARIADNE family AT1G65430 62.9 2.6e-39 161.0
Lcy3g1199 . 58 479 ARIADNE family AT2G31780 54.7 1.3e-139 493.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72