Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1220 ATGGCGTCCACGCCTTTCCGCCTTGTTGTCTCCACCAGCTTTCTCGATTTTGATTTCCCAAAATCTAAACCCTTATCATCTCACCCTTCTCCCTCTCTTCGATCCTCCACCGTTTACTCCCCTTTCTTCTCTATCCCCTTCCTTCAAGATTCTTCTCCACTCACAACCGCTTTCCCTTCTTCTTCTCTTCGATTTTCCCTTGGATCTCGCCGGCGGCAGTGTTCTATTGGCGCTCCGGTGCTCGGAGTTGCTTTTTTTTCCTCCGAATTTCATGGGTTCGGTGATTTTGGAAGGGGGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCAGATGAAGCGGCGCTTTGTGCCAAATGCGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAGGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGCGATGAACCAATTCACTCAACAGGTAGTCTTTCAGCAAACCACCAAAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTTGACAAAGTCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAATTCCTAATTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGATAAGCAGAAAGAACAACTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCCCAAGAAGCTTTAGCTGCGGCTGAAGTTCCTGAACTTCCTACATCACACTCAAGTGGTGCATTTGCATGCAGACCGACAAAGTCGAGCACGTCATACAAAAAGCCTAGGATCGAGGTGGTAGACGACGAGGAGTTTTTTACCGTTCCTGATCTTGGATGA 1014 47.34 MASTPFRLVVSTSFLDFDFPKSKPLSSHPSPSLRSSTVYSPFFSIPFLQDSSPLTTAFPSSSLRFSLGSRRRQCSIGAPVLGVAFFSSEFHGFGDFGRGKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQIPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSSGAFACRPTKSSTSYKKPRIEVVDDEEFFTVPDLG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37646038 37649556 - Maker00015123 Lcy3g1220 628412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1220 337 ProSiteProfiles Zinc finger B-box type profile. 100 147 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 ProSiteProfiles Zinc finger B-box type profile. 152 199 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 PANTHER B-BOX ZINC FINGER PROTEIN 22 101 336 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy3g1220 337 CDD Bbox1_BBX-like 156 198 IPR049808 -
Lcy3g1220 337 MobiDBLite consensus disorder prediction 214 234 - -
Lcy3g1220 337 Gene3D Classic Zinc Finger 101 219 - -
Lcy3g1220 337 Pfam B-box zinc finger 103 145 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 Pfam B-box zinc finger 153 195 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 MobiDBLite consensus disorder prediction 304 318 - -
Lcy3g1220 337 SMART bboxneu5 100 147 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 SMART bboxneu5 152 199 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 MobiDBLite consensus disorder prediction 294 319 - -
Lcy3g1220 337 CDD Bbox1_BBX-like 105 147 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1220 Lcy-Chr3:37646038 Lcy6g0640 Lcy-Chr6:6095079 7.21E-41 dispersed
Lcy3g1220 Lcy-Chr3:37646038 Lcy13g1934 Lcy-Chr13:38364668 1.35E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19834 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1220 - - - 0.0