Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1220 ATGGCGTCCACGCCTTTCCGCCTTGTTGTCTCCACCAGCTTTCTCGATTTTGATTTCCCAAAATCTAAACCCTTATCATCTCACCCTTCTCCCTCTCTTCGATCCTCCACCGTTTACTCCCCTTTCTTCTCTATCCCCTTCCTTCAAGATTCTTCTCCACTCACAACCGCTTTCCCTTCTTCTTCTCTTCGATTTTCCCTTGGATCTCGCCGGCGGCAGTGTTCTATTGGCGCTCCGGTGCTCGGAGTTGCTTTTTTTTCCTCCGAATTTCATGGGTTCGGTGATTTTGGAAGGGGGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCAGATGAAGCGGCGCTTTGTGCCAAATGCGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAGGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGCGATGAACCAATTCACTCAACAGGTAGTCTTTCAGCAAACCACCAAAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTTGACAAAGTCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAATTCCTAATTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGATAAGCAGAAAGAACAACTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCCCAAGAAGCTTTAGCTGCGGCTGAAGTTCCTGAACTTCCTACATCACACTCAAGTGGTGCATTTGCATGCAGACCGACAAAGTCGAGCACGTCATACAAAAAGCCTAGGATCGAGGTGGTAGACGACGAGGAGTTTTTTACCGTTCCTGATCTTGGATGA 1014 47.34 MASTPFRLVVSTSFLDFDFPKSKPLSSHPSPSLRSSTVYSPFFSIPFLQDSSPLTTAFPSSSLRFSLGSRRRQCSIGAPVLGVAFFSSEFHGFGDFGRGKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQIPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSSGAFACRPTKSSTSYKKPRIEVVDDEEFFTVPDLG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37646038 37649556 - Maker00015123 Lcy3g1220 628412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1220 337 ProSiteProfiles Zinc finger B-box type profile. 100 147 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 ProSiteProfiles Zinc finger B-box type profile. 152 199 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 PANTHER B-BOX ZINC FINGER PROTEIN 22 101 336 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy3g1220 337 CDD Bbox1_BBX-like 156 198 IPR049808 -
Lcy3g1220 337 MobiDBLite consensus disorder prediction 214 234 - -
Lcy3g1220 337 Gene3D Classic Zinc Finger 101 219 - -
Lcy3g1220 337 Pfam B-box zinc finger 103 145 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 Pfam B-box zinc finger 153 195 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 MobiDBLite consensus disorder prediction 304 318 - -
Lcy3g1220 337 SMART bboxneu5 100 147 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 SMART bboxneu5 152 199 IPR000315 GO:0008270(InterPro)
Lcy3g1220 337 MobiDBLite consensus disorder prediction 294 319 - -
Lcy3g1220 337 CDD Bbox1_BBX-like 105 147 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1220 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1220 Lcy-Chr3:37646038 Lcy6g0640 Lcy-Chr6:6095079 7.21E-41 dispersed
Lcy3g1220 Lcy-Chr3:37646038 Lcy13g1934 Lcy-Chr13:38364668 1.35E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0007 . 137 514 Orphan Transcription Factor Family AT5G61850 69.3 3.9e-125 445.7
Lcy3g1220 . 101 267 Orphan Transcription Factor Family AT1G06040 68.4 6.3e-61 231.1
Lcy6g0640 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19834 None None None None Lcy TF