Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1226 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCACCATCATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACTAGCCAGTCGTCGGAGTACTCGCCGGAGCACTCTCCATCCTCTGCTGCCGCCACCGCTGCCGCTGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGCGACTCTGATCAGAAATTGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGGGCCACGGAAACTGGCCTCAGTTGCTACAAAACCCTCGTCGCCGTTGCCGAAAAGAATCACTCCTTCGACTCCGCTCTGAGGTTGATCCTCAAGTTCCAAGAGGCAAGTCCGTGGACGACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAGGCCCTCGAGGGAGAATCGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGACGACACCCCACATCTCAAGCTCACAGTGGTGGCAACAACAACAATAGTCAAGTCTCTAATGAAGGAAATAGGCCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCCTTCGAGTTCAACCCCATAACAAATCTCAACCACTTAACCGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGACGAAGCCATTGCCATAAATTGCATTGGAGCCTTGAGAAGAGTGAGACTTGAAAAGAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTCGAGTCTTGACGATTGTTGAGGAAGAAGCTGATTTAATGAGCTCAAAAAATGACTTCTTGAAGTGCTTTGAAGAGTGCCTTAGATTCTACACTCTCTACTTTGAGATGTTGGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTGTTGGGGTGTGATGAAAGTGAAGAAGAAATGGAGAGTGAGAGAAGAGAAAGAGGAAAGCAATGGAGCAAAAGGCTGAAAGAAGCAGCTTTTTCTTCAGCTGGATTTAGTGAAGATGTGATGGATGATGTTAAGGCTTTGCTCAAGAGGTACAAACCCGGTTGGGCGTTGCTGCGTCGGACCGCCACCGACGCCGCCGGAGAAGAAGAAGAAGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAG 1362 47.65 MDITFFTAKEAPTSFFNQSHDHHHHHHLHHLHFSNLDMQSSTSQSSEYSPEHSPSSAAATAAAGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKLASYFLQALFCRATETGLSCYKTLVAVAEKNHSFDSALRLILKFQEASPWTTFGHVASNGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVATTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEDEAIAINCIGALRRVRLEKRNNVISMLKSLKPRVLTIVEEEADLMSSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDESEEEMESERRERGKQWSKRLKEAAFSSAGFSEDVMDDVKALLKRYKPGWALLRRTATDAAGEEEEGGDDSGGIYLTWKEEPVVWVSAWKP 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37763433 37765873 - Maker00014385 Lcy3g1226 628418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1226 453 ProSiteProfiles GRAS family profile. 58 452 IPR005202 -
Lcy3g1226 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 451 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy3g1226 453 Pfam GRAS domain family 69 452 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0915 Lcy-Chr1:7976198 Lcy3g1226 Lcy-Chr3:37763433 2.50E-148 dispersed
Lcy3g1226 Lcy-Chr3:37763433 Lcy13g1039 Lcy-Chr13:22711472 1.34E-105 dispersed
Lcy3g1226 Lcy-Chr3:37763433 Lcy8g0721 Lcy-Chr8:26684055 1.28E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19835 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1226 K27743 - csv:101206730 748.814