Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1228 ATGATGAGAGAGAGAAGAAAGTACTGTATTTTTGTATCTCTTGTGGGCATAGCATTATTGATGAGGTTTAGCATTGTGGAAGGTGAAAATACATTACAATCACCAGTGAAGCTCATATGGCATTACTACAAACTCAACACAAGTTGCCCTAATGCTGAGACATTCATAAAGCATCAAGTCAACTTGTTTTGGCAAAAGGATAAAAGCATCACTGCCAAGTTCCTTCGCTTGCTCTCTGCTGATTGCCTTTCCAAAAATGTATATATATCTTCTTCTTCTACCACCTCTACTTTATTTGTTCGTTCGGTTTTATCTTTCATAGAGATCGATCGATCGAGTGATGATGGTGATTTTCCTGGTTGTGATGGTTCAATACTTCTTGATGGTCCAAACTCAGAGAAAAATGCACCACAAAACCAAGACCTTGGAGGGTTTGAAGAAATCGATAAGATCAAAATTGTACTCGAAGACCGATGCCCGGGCGTTGTTTCTTGTGCAGACATTCTCAACTTAGCCACTAGAGACGCTGCCCATTTGGCAGGTGCGCCGTCTTATCCAGTTTTTACAGGGAGGAGGGATGGTTTGACAACAAGTGTTGATGAAGTGGATTTTCCATTATCCCCCTCCATATCATGGCAAGAAGGGCTTGCATATTTCCAGTCTAAAGGTCTTGATGTTTTGGACATGCCAACATTGCTAGGTGCACATTCAATGGGAAAAACACACTGTCGCTACATCATGGACAGACTATACAATTTCAATGGCACAGGAAAACCAGATCCAACAATGAACAAATCATTCTTAAAAGAGCTTCAAAAGAAATGCCCAAAGAATTCAAAAACAGACCCAACTGTGAATCTAACACCAAAATCTGGCAATGACTATCAATTCACAGGTCTCTACTACTCCAGAATCCTTTCCAAGAAGGCGGTCCTTGGAATCGATCAACAGCTTCTTTTCGGTAACGACACCAACGAAATCATCCAAGAGTTTGCTCCTAAATCTGGATTTGAAGACTTCCGTAGGTCCTTTGCTCTCTCCATGAGTAGGATGGGAAGTATCAAGGTCTTGACCGGAAAAGATGGCGAGATTCGCCGAAATTGTCGACGGAGAAACTAG 1119 41.55 MMRERRKYCIFVSLVGIALLMRFSIVEGENTLQSPVKLIWHYYKLNTSCPNAETFIKHQVNLFWQKDKSITAKFLRLLSADCLSKNVYISSSSTTSTLFVRSVLSFIEIDRSSDDGDFPGCDGSILLDGPNSEKNAPQNQDLGGFEEIDKIKIVLEDRCPGVVSCADILNLATRDAAHLAGAPSYPVFTGRRDGLTTSVDEVDFPLSPSISWQEGLAYFQSKGLDVLDMPTLLGAHSMGKTHCRYIMDRLYNFNGTGKPDPTMNKSFLKELQKKCPKNSKTDPTVNLTPKSGNDYQFTGLYYSRILSKKAVLGIDQQLLFGNDTNEIIQEFAPKSGFEDFRRSFALSMSRMGSIKVLTGKDGEIRRNCRRRN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37825286 37827991 + Maker00015190 Lcy3g1228 628420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1228 372 ProSiteProfiles Plant heme peroxidase family profile. 37 372 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Plant peroxidase signature 346 359 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Plant peroxidase signature 162 172 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Plant peroxidase signature 227 239 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Plant peroxidase signature 304 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 SUPERFAMILY Heme-dependent peroxidases 44 372 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 ProSitePatterns Peroxidases proximal heme-ligand signature. 228 238 IPR019793 -
Lcy3g1228 372 CDD secretory_peroxidase 37 370 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy3g1228 372 PRINTS Haem peroxidase superfamily signature 228 243 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Haem peroxidase superfamily signature 181 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PRINTS Haem peroxidase superfamily signature 163 180 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 Gene3D Peroxidase, domain 2 206 354 - -
Lcy3g1228 372 FunFam Peroxidase 206 351 - -
Lcy3g1228 372 Pfam Peroxidase 58 332 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy3g1228 372 PANTHER PEROXIDASE 25-RELATED 42 368 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy3g1228 372 Gene3D - 46 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1228 Lcy-Chr3:37825286 Lcy4g0061 Lcy-Chr4:907297 1.18E-60 dispersed
Lcy3g1228 Lcy-Chr3:37825286 Lcy1g1007 Lcy-Chr1:8994019 3.06E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1228 K00430 - csv:101213667 555.444