Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1229 ATGACTAATAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATGTGCTCATGATGCTGGTGTCAACTTATTCTTTTTGAATGGACCTGAAATTATAAGCCAATATCATGGGGAAAGTGAACAGGCCTTGCACGAAGTTTTCGAGGTGGCAAGCCAAGCTGCACCGGCTGTGGTATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTCGCTACATTGCTTAATCTGATGGATGGGATCAACCGAGGTGGTGGTCCACTTGTAATTGCTTCTACCAACAGGCCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGATTACTCATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACTGATTGCTTTAGTTCTGGTAGATCCGTTATAACAGAGGAACAACATAAGCTTACCAAGGTGGAGCAGAAAGCCAATGTTGATGATATGATTTTAGAACCCGTTCTCTCAAAAGATTCGAGAAGTATATCAGGGGTTTGCTCAAACTTTGCGTCTTCATCATTCTCTGAACATACTTTTACATCTGAGGCTGTAACATGTGTGTCCTCGAATGAAGTGGGAGCTGATAGTGAGGATATTTTTAACTCTTCAGAAATCAAGTGTAGATTGAATGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGAGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAGGGTCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAAGCAGTTAGATCTCTATTTGCTAAGGCAAGAGCCAATGCCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTTATGAGTCAACTCCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATCGTCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGATTTGATCGGTTGCTGTATGTTGGGCCTCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTGTACAGGGGCTGACATATCATTAATCTGCAGAGAAGCCGCTTTATTTGCTCTTGAGGCGAACCTTGAGGCTTCAAAAATAAATATGGAACATTTAGAGACTGCAGTTAGACACGTGAAGCCATCTGAAACTGAGCCTTATCAAGAATTATCATCTAGGTTTCAAAGGCTTATGTTCATTAGAAGCTTGTGGGGTAGCAACAGTATGGAGTGGGTGGCTCTAGAGTCTAGGGACGCTGGGGATATTCTCATGCTATGGGATGGGAACTCAAATGTTCTGTTGGGGAGGGGCTCAAGTGTTTTTACTTCTGGGAAGATTGTTGGGTGTCATGTGAATGATATTCTTCATTTGTTGTGGGGTCATCAGTTTGCTCATTCTCTTTGGATTCAATGGATGAGCTCGTTTGGTTTATGTTTGGCTTGGAGTAGTAACTTTTATGCTATGGTTGAGGAGGTGGTGGCCAGTATGTATGAGAATGAATATGGTTGGTTTATTAATATTATGAGGGATGGAGTTGGAAGTTGGCTTCAAATGAGCAGCAACAAATCGGCTGCTGGTGATTCATTTACAAATTGTCTTCAAACAATTGCTCTGTCATGGACTCAATCAGGAACAAGATACCATTTACAAATTATGGGCTCGCATGATTTTATTCACCACGTTCCTTGCACATATCCTGCAATGGAGTTTTTGGAGGCCTGTGGACTGAAGAGGATTCGTAGCACAAGTCTTATGGGCTCCACGATGTCTTATAAAATATATGGCTTGAGAGAATTTTGTGTTAATGATGTGGAGAGGTTTGGAGGTAGTTTGACCTGA 2388 42.55 MTNKGVLLHGPPGTGKTSLAQLCAHDAGVNLFFLNGPEIISQYHGESEQALHEVFEVASQAAPAVVLIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRGGGPLVIASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLSMITHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSGRSVITEEQHKLTKVEQKANVDDMILEPVLSKDSRSISGVCSNFASSSFSEHTFTSEAVTCVSSNEVGADSEDIFNSSEIKCRLNVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICREAALFALEANLEASKINMEHLETAVRHVKPSETEPYQELSSRFQRLMFIRSLWGSNSMEWVALESRDAGDILMLWDGNSNVLLGRGSSVFTSGKIVGCHVNDILHLLWGHQFAHSLWIQWMSSFGLCLAWSSNFYAMVEEVVASMYENEYGWFINIMRDGVGSWLQMSSNKSAAGDSFTNCLQTIALSWTQSGTRYHLQIMGSHDFIHHVPCTYPAMEFLEACGLKRIRSTSLMGSTMSYKIYGLREFCVNDVERFGGSLT 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37830491 37840306 - Maker00014615 Lcy3g1229 628421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1229 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 211 IPR027417 -
Lcy3g1229 795 Gene3D - 490 560 - -
Lcy3g1229 795 Pfam AAA+ lid domain 159 203 IPR041569 -
Lcy3g1229 795 Pfam AAA+ lid domain 511 556 IPR041569 -
Lcy3g1229 795 Gene3D - 1 135 IPR027417 -
Lcy3g1229 795 ProSitePatterns AAA-protein family signature. 459 477 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy3g1229 795 Gene3D - 314 565 IPR027417 -
Lcy3g1229 795 FunFam calmodulin-interacting protein 111 isoform X1 314 489 - -
Lcy3g1229 795 SMART AAA_5 2 138 IPR003593 GO:0016887(InterPro)
Lcy3g1229 795 SMART AAA_5 353 491 IPR003593 GO:0016887(InterPro)
Lcy3g1229 795 FunFam Transitional endoplasmic reticulum ATPase 1 135 - -
Lcy3g1229 795 Pfam ATPase family associated with various cellular activities (AAA) 6 135 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy3g1229 795 Pfam ATPase family associated with various cellular activities (AAA) 357 488 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy3g1229 795 FunFam spermatogenesis-associated protein 5-like protein 1 490 574 - -
Lcy3g1229 795 PANTHER AAA-FAMILY ATPASE 86 577 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Lcy3g1229 795 CDD RecA-like_CDC48_r2-like 328 487 - -
Lcy3g1229 795 Coils Coil 538 558 - -
Lcy3g1229 795 Gene3D - 136 264 - -
Lcy3g1229 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 571 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1488 Lcy-Chr10:39074011 Lcy3g1229 Lcy-Chr3:37830491 2.38E-301 dispersed
Lcy2g0135 Lcy-Chr2:1062117 Lcy3g1229 Lcy-Chr3:37830491 2.79E-133 dispersed
Lcy3g1229 Lcy-Chr3:37830491 Lcy5g0296 Lcy-Chr5:2780073 8.21E-131 dispersed
Lcy3g1229 Lcy-Chr3:37830491 Lcy10g0995 Lcy-Chr10:31903416 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1229 - - - 0.0