Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1254 ATGAGTTCATTCTTTGTTGGGTCTCACTCTTCTTCTTCAGCTGCAACTTCCACTGCCATCTCTAATCCTTCTAATGTCCCTCTGCTCTATAGATCTTTGCAGGTATGTGAATTTCTTATCCCCAATCAAAAGAAATTTTTGGCTCTTACTATAGCGTTCTTGTTTTCAACTCATCTGGGCTGGTTTATATGGTTGATTTCCATGAACTGGTTAATCAATGGTGGAGTTATGGAAACTAAGGCTGGTTTTCTTGGTGGGGGTGGGAAGATATGGCTCCAATTGAAGGAGAAGGTCATTGAGTACTGTTGCAAGATGCAGCACCAGTACTGCCAGTATATTGGATCCAAGAAAGTCAGAAAAACATGGTGGAGAAGGCTTTTGGTGGCCTGGGTTCTTGGCTTTACTCTTCTTTCTCTATGGATCTTCCACTACATGAGCTCTCAAGCTACAGAGAAGAGGAAAGAGGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGCATGAATCATATCCAGGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAGAACCCATCTGCTATAGATCAGAGGACTTTTGCGAGGTACACAGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCGGTGAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGATAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGAGGAAGACTGTAAGAATGTATTACGTGCTAGAGCATCAGGAAAGGGAGTCTTAACTGCTCCGTTCAGGTTAATCAAAACAAATCGTCTAGGAGTCATACTTACATTTGCTGTCTACAAGAGAGAACTTCCCTCAAACGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGTGGAGTTTTTGATATCGAGTCACTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACAAACCAATCGCACCCGATCAGTATGTATGGTAAAGATGTATCTGAAGATGGGATGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCAGACAGGAAGCATGAGATGCGATGCAGATTCAAGCAAAAACAACCTTGGCCATGGTTAGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACCTTGAACCGAATCGCCAAGGTGGAGGATGATTATCATGAGATGATGGAACTCAAGAAACGAGCAGAAGATGCTGATGTTGCCAAATCCCAGTTCCTTGCAACCGTGTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAGACTTAGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGATAGTGGAAAGGCTTTGGTATCACTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGGAAGCTTGAGCTCGAAGCAATACCATTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTTTCTGGGAAATCTCAAGAAAAGGGACTGGAGCTGGCAGTTTACATCTCAGATAGTGTTCCTGAGATGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTCATGGGAAACTCAATCAAGGCAAGTAATGCTTTCTTTTATATTGCCAATAGAAATAATAGGATAATTGGTTGGAGAGGAATTCTGCTAAGTCATGATGTTTGGATTTGGCAGTTCACAGAGAAAGGACACATATTTGTCACTGTTAACCTCGTCGAGGAGGTTATCGAATCGATTGATCTTGAGATCGAGTCGTCAAAAAACAGCACCTTGAGTGGCTATCCTGTTGCAAATAGACGCCTTAGCTGGGCAGGATTCCGTACTTTCAGTCAAGAGGGACCTACTGTTTGTCATTTCCTGCCATCTCCAGCAGACTCTATTAATCTCATGGTATCCGTGGAAGATACGGGCGTTGGTATTCCTCTAGAAGCTCAATCACGCGTTTTCACTCCCTTCATGCAGGTTCGACCATCCATCCCTAGAACCCATGAGGGAACGGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGCGAGATTGGTTTTGTGAGTGTACCGAAGGTTGGCTCTACCTTCACATTCACAGCAGTTTTCAATGGCTCTTCCAATTCAAGTGAGTATAACAAAACCCAACAAGTTAAGAACACCTCCATCCCTGCATCCTCAGAATTTAAGGGTATGAGGGCATTAGTTGTGGACCACAGACCTATTCGGGCCAAAGTGTCAAGATATCATATTCGACGTCTTGGAATAAATGTTGAATTATTATCCGACTTGAATCAATGTCTGTCTAACACAAGATTTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAAGATCTTTGGGATCAGGATACGAGCACATCAGATCTCTTTATCAAGAACTTGAGAAATTCTTATGGGGTTCCTCCCAAACTATTTCTTCTTACCAGCTCCATTAGTTCTTCAAAAGCTAGCACTTTAATTTCTGATCTACTCACTCCCACAGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTTTACACAGGGTCATGGGTGTAGGGATCAAGGGTAATCCTCGCAACGGAGAGCTTCCTGTACTCTCTCTCCGTAATTTACTTCTTGGTCGGAAAATTCTTGTTATAGATGACAATGAGGTGAACCGTATCGTTGCTGCTGGTGCTCTAAAACGATATGGAGCTGAAGTGGTATGTGAAAACAGTGGAAGCGCTGCAATCCAACTGCTTACACCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGGTTTCAAGCTACAAGGAGTATTCGGGAAATTGAACATGGTATCAATGATGGTATTCGAGCTGGAGAACTATCAGAAGAAGCGTATGAAAATAGAAGTAATTGGCATGTACCCATCTTGGCCATGACTGCAGACGTAATCCAGGCTACTCATGAGGAATGCCTTCGGTGTGGGATGGATGGATACGTTTCAAAGCCATTTGAAGTTGAACGACTTTACCGAGAATCAGGATGTACAGCATGCTGCTTTAAAGGGTGTAAAATACCTCTGATCGAAGGTGATCGACTACTTGGATTGCTTCATATTATGCCAGGCAAGCCTAAATTTTGTGGAAGAGTATTGGTCACTGAGGTCAGAAATTCAAGATTCATTTGCAAGCAGAATTCATCAGATCATCAGAGGGCCAGAAATAGCACTGTAGATATCAATTTAGATGGAAGAAAGGAAGAAGAATGTTGTGTGGCAACTGGAAGGAAGCGTTTTGTATATTAA 3552 42.93 MSSFFVGSHSSSSAATSTAISNPSNVPLLYRSLQVCEFLIPNQKKFLALTIAFLFSTHLGWFIWLISMNWLINGGVMETKAGFLGGGGKIWLQLKEKVIEYCCKMQHQYCQYIGSKKVRKTWWRRLLVAWVLGFTLLSLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGEEDCKNVLRARASGKGVLTAPFRLIKTNRLGVILTFAVYKRELPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGMQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPEMLIGDPGRFRQIITNLMGNSIKASNAFFYIANRNNRIIGWRGILLSHDVWIWQFTEKGHIFVTVNLVEEVIESIDLEIESSKNSTLSGYPVANRRLSWAGFRTFSQEGPTVCHFLPSPADSINLMVSVEDTGVGIPLEAQSRVFTPFMQVRPSIPRTHEGTGIGLSISKCLVGLMKGEIGFVSVPKVGSTFTFTAVFNGSSNSSEYNKTQQVKNTSIPASSEFKGMRALVVDHRPIRAKVSRYHIRRLGINVELLSDLNQCLSNTRFSGSTINMIFVEQDLWDQDTSTSDLFIKNLRNSYGVPPKLFLLTSSISSSKASTLISDLLTPTVILKPLRAGMLAASLHRVMGVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNEVNRIVAAGALKRYGAEVVCENSGSAAIQLLTPPHHFDACFMDIQMPEMDGFQATRSIREIEHGINDGIRAGELSEEAYENRSNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYRESGCTACCFKGCKIPLIEGDRLLGLLHIMPGKPKFCGRVLVTEVRNSRFICKQNSSDHQRARNSTVDINLDGRKEEECCVATGRKRFVY 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38292846 38300286 + Maker00014320 Lcy3g1254 628446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1254 1183 ProSiteProfiles Response regulatory domain profile. 963 1100 IPR001789 GO:0000160(InterPro)
Lcy3g1254 1183 CDD REC_hyHK_CKI1_RcsC-like 964 1094 - -
Lcy3g1254 1183 ProSiteProfiles Response regulatory domain profile. 816 937 IPR001789 GO:0000160(InterPro)
Lcy3g1254 1183 Gene3D - 145 197 - -
Lcy3g1254 1183 Gene3D - 450 544 - -
Lcy3g1254 1183 Coils Coil 458 478 - -
Lcy3g1254 1183 CDD PRTases_typeI 910 989 IPR000836 -
Lcy3g1254 1183 SUPERFAMILY CheY-like 961 1094 IPR011006 -
Lcy3g1254 1183 MobiDBLite consensus disorder prediction 1 20 - -
Lcy3g1254 1183 ProSiteProfiles Histidine kinase domain profile. 488 788 IPR005467 -
Lcy3g1254 1183 SMART REC_2 962 1096 IPR001789 GO:0000160(InterPro)
Lcy3g1254 1183 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 712 783 IPR003594 -
Lcy3g1254 1183 SMART CHASE_2 194 395 IPR006189 -
Lcy3g1254 1183 SUPERFAMILY CheY-like 811 938 IPR011006 -
Lcy3g1254 1183 PANTHER TWO-COMPONENT HISTIDINE KINASE 120 1093 IPR050956 -
Lcy3g1254 1183 Pfam CHASE domain 197 393 IPR006189 -
Lcy3g1254 1183 FunFam Histidine kinase 4 198 427 - -
Lcy3g1254 1183 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 466 547 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy3g1254 1183 PRINTS Bacterial sensor protein C-terminal signature 713 727 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy3g1254 1183 PRINTS Bacterial sensor protein C-terminal signature 748 766 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy3g1254 1183 PRINTS Bacterial sensor protein C-terminal signature 731 741 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy3g1254 1183 PRINTS Bacterial sensor protein C-terminal signature 772 785 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy3g1254 1183 CDD HisKA 481 542 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy3g1254 1183 FunFam Histidine kinase 4 453 544 - -
Lcy3g1254 1183 Gene3D - 955 1097 - -
Lcy3g1254 1183 Pfam His Kinase A (phospho-acceptor) domain 481 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy3g1254 1183 SMART HKATPase_4 593 788 IPR003594 -
Lcy3g1254 1183 Pfam Response regulator receiver domain 964 1033 IPR001789 GO:0000160(InterPro)
Lcy3g1254 1183 Gene3D CHASE domain 198 427 IPR042240 -
Lcy3g1254 1183 ProSiteProfiles CHASE domain profile. 194 420 IPR006189 -
Lcy3g1254 1183 SMART HisKA_10 481 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy3g1254 1183 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 554 783 IPR036890 -
Lcy3g1254 1183 Gene3D - 545 789 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1594 Lcy-Chr10:40367834 Lcy3g1254 Lcy-Chr3:38292846 0 dispersed
Lcy3g1254 Lcy-Chr3:38292846 Lcy7g1375 Lcy-Chr7:20450681 0 dispersed
Lcy3g1254 Lcy-Chr3:38292846 Lcy8g1364 Lcy-Chr8:40370520 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19836 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1254 K14489 - csv:101216313 1793.48