Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1256 ATGGGGGGTATTGGTATTGGCAATTTTCAAAATCGCAATCTTGCTCTTCTTGCAAAGTGGATCTGGAGATTTTTACATGAGGAAAACTCTCTATGGCATAAGCTGATTGTAGCTAAATATTATAACTCTGAGTTGCCTAGTCTTTGGCCTAGCATTATTCAGAAAAGTTCTCACAAATCTCCTTGGCGATTTATTACTTCCACTATTGACCTTGTATCTTCACGTGTAAAAAGAAGATTGGGTAATGGTCTTGCTACATCATTTTGGCATGATTCGTCGTTAAGTTGTGGTGTTCTGGCTACAAATTTTCCTCGCCTTTATCGTTTAACAGATCGTCCGAGGAGTTTGGTTGGTGAAACATGGATTGCTACTCAATCAGCATGGGATCTGAATCTTCGGCGTAATTTAAATGATGTAGAGACAGAGGAATGGATGGACTTATCACTTATTCTTTCCTCCATCAGATTACAGAACCGTAATGATTCCTGGATTTGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAACCTCTCATGGAAGACTTAGTAGACCGTCCGAATATGGCAAATGATCTATATAAGGTCATTTGGTCAGATTTCTATCCAAAGAAGATCAAGATTTTTTTATGGGAACTCAGTCATGGTGCTGTTAATACAGCTGATCGTCTTCAACGACGGATGCCTCATTTTCATTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGTTCAGAACATCCTAGGCATCTATTTGTCCATTGTACCTTCGCTTCCAGATATTGGTCAGAGATTCTTGATGCTTTTGGATGGTCCATCGTTTTTCCAAATTGCATTAAGGATGTTCTTACTCTCATTTTTGTGGATCATCCCTTTCGTGGAGAAAAGAAGATCTTGTGGCTTGCTTTGAACAGAGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTATTCAGAATGGGGTTCTTTGTTGTGAAGCACCTCCACACCTTCCTGGGAAGGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATACAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTGACAAGATAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGTCTCTTCTAGTTGGTAGTCAAACTCCTTCTGCTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCACCTCTGGCTTTCTTCCCAACGGAAAGATGGACGTGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCATTAAACCCGATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAGAAAATGGTTGCTGCACTAATCGCCTCTGAAGCATCAGCTGGTGCTGTGACTGATCCTAGTTCACAAGATCCAGTTGGTAAAACTGCAGCGTCAATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGCGAGTTCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGCAAATTGCATTTCGAAGGGGAACCTCCCTTATACTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCACATTCATTCAGAAAGCGGCAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAGTACAGAGGTTGGAAGGGTCGTAGAGAGTTCTTATCAATTCGTCAAAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGAAGTAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTTGAAGGTACTATCGACGAGGCTGTTTCACGAGTTCTATCCATGGTTGATTCTCCGGATGCTCGTCTGCAATATCACCGCATGCTTGAAGGCTTTCGAGAAGCTAAGGCTGAACTCAATGGCGCTGGTGGCGAAACTGCAGCATCGACTTCTCTCGGTGATGTTTCTGGAATGGAAGATTGTAATCAATATCCCAAGTTTGTATAG 2556 41.74 MGGIGIGNFQNRNLALLAKWIWRFLHEENSLWHKLIVAKYYNSELPSLWPSIIQKSSHKSPWRFITSTIDLVSSRVKRRLGNGLATSFWHDSSLSCGVLATNFPRLYRLTDRPRSLVGETWIATQSAWDLNLRRNLNDVETEEWMDLSLILSSIRLQNRNDSWIWPLESSNIFSVKPLMEDLVDRPNMANDLYKVIWSDFYPKKIKIFLWELSHGAVNTADRLQRRMPHFHLSPSWCIMCAASSEHPRHLFVHCTFASRYWSEILDAFGWSIVFPNCIKDVLTLIFVDHPFRGEKKILWLALNRVIIIGSFLCDPSESPWACMFGDIEVPLQIIQNGVLCCEAPPHLPGKVSFCITSGNREPCSEYREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSSMQKSDKIDSEVRSNNLKAGDDQWSSLIESLLVGSQTPSATIDWLLQELLKDKLHLWLSSQRKDGRDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPSSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGEFKGSAEVEAEMTANCISKGNLPYTEDYIPLKNTLAAVRNASQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARLQYHRMLEGFREAKAELNGAGGETAASTSLGDVSGMEDCNQYPKFV 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38305579 38311335 - Maker00013870 Lcy3g1256 628448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1256 851 ProSiteProfiles IQ motif profile. 690 719 - -
Lcy3g1256 851 Gene3D - 690 737 - -
Lcy3g1256 851 SMART iq_5 689 711 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 SMART iq_5 712 734 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 SMART iq_5 632 654 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 Pfam IQ calmodulin-binding motif 715 734 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 Pfam IQ calmodulin-binding motif 692 710 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 Pfam Ankyrin repeats (3 copies) 489 575 IPR002110 GO:0005515(InterPro)
Lcy3g1256 851 Gene3D - 376 581 IPR036770 -
Lcy3g1256 851 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 304 819 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy3g1256 851 ProSiteProfiles Ankyrin repeat profile. 516 548 IPR002110 GO:0005515(InterPro)
Lcy3g1256 851 Pfam zinc-binding in reverse transcriptase 173 261 IPR026960 -
Lcy3g1256 851 ProSiteProfiles IQ motif profile. 633 661 - -
Lcy3g1256 851 ProSiteProfiles Ankyrin repeat region circular profile. 516 542 - -
Lcy3g1256 851 SUPERFAMILY Ankyrin repeat 486 577 IPR036770 -
Lcy3g1256 851 ProSiteProfiles IQ motif profile. 713 737 - -
Lcy3g1256 851 Gene3D Immunoglobulins 301 375 IPR013783 -
Lcy3g1256 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 741 IPR027417 -
Lcy3g1256 851 SUPERFAMILY E set domains 304 371 IPR014756 -
Lcy3g1256 851 FunFam Calmodulin-binding transcription activator 2 689 737 - -
Lcy3g1256 851 SMART ANK_2a 516 545 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0790 Lcy-Chr12:10281141 Lcy3g1256 Lcy-Chr3:38305579 7.46E-66 dispersed
Lcy3g1256 Lcy-Chr3:38305579 Lcy6g0848 Lcy-Chr6:8547665 4.86E-181 dispersed
Lcy6g1030 Lcy-Chr6:11166738 Lcy3g1256 Lcy-Chr3:38305579 1.61E-43 dispersed
Lcy9g1130 Lcy-Chr9:35235509 Lcy3g1256 Lcy-Chr3:38305579 2.53E-08 dispersed
Lcy3g1256 Lcy-Chr3:38305579 Lcy3g1260 Lcy-Chr3:38323246 3.80E-101 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1256 K21596 - csv:101222798 955.666