Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1256 ATGGGGGGTATTGGTATTGGCAATTTTCAAAATCGCAATCTTGCTCTTCTTGCAAAGTGGATCTGGAGATTTTTACATGAGGAAAACTCTCTATGGCATAAGCTGATTGTAGCTAAATATTATAACTCTGAGTTGCCTAGTCTTTGGCCTAGCATTATTCAGAAAAGTTCTCACAAATCTCCTTGGCGATTTATTACTTCCACTATTGACCTTGTATCTTCACGTGTAAAAAGAAGATTGGGTAATGGTCTTGCTACATCATTTTGGCATGATTCGTCGTTAAGTTGTGGTGTTCTGGCTACAAATTTTCCTCGCCTTTATCGTTTAACAGATCGTCCGAGGAGTTTGGTTGGTGAAACATGGATTGCTACTCAATCAGCATGGGATCTGAATCTTCGGCGTAATTTAAATGATGTAGAGACAGAGGAATGGATGGACTTATCACTTATTCTTTCCTCCATCAGATTACAGAACCGTAATGATTCCTGGATTTGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAACCTCTCATGGAAGACTTAGTAGACCGTCCGAATATGGCAAATGATCTATATAAGGTCATTTGGTCAGATTTCTATCCAAAGAAGATCAAGATTTTTTTATGGGAACTCAGTCATGGTGCTGTTAATACAGCTGATCGTCTTCAACGACGGATGCCTCATTTTCATTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGTTCAGAACATCCTAGGCATCTATTTGTCCATTGTACCTTCGCTTCCAGATATTGGTCAGAGATTCTTGATGCTTTTGGATGGTCCATCGTTTTTCCAAATTGCATTAAGGATGTTCTTACTCTCATTTTTGTGGATCATCCCTTTCGTGGAGAAAAGAAGATCTTGTGGCTTGCTTTGAACAGAGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTATTCAGAATGGGGTTCTTTGTTGTGAAGCACCTCCACACCTTCCTGGGAAGGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATACAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTGACAAGATAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGTCTCTTCTAGTTGGTAGTCAAACTCCTTCTGCTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCACCTCTGGCTTTCTTCCCAACGGAAAGATGGACGTGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCATTAAACCCGATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAGAAAATGGTTGCTGCACTAATCGCCTCTGAAGCATCAGCTGGTGCTGTGACTGATCCTAGTTCACAAGATCCAGTTGGTAAAACTGCAGCGTCAATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGCGAGTTCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGCAAATTGCATTTCGAAGGGGAACCTCCCTTATACTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCACATTCATTCAGAAAGCGGCAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAGTACAGAGGTTGGAAGGGTCGTAGAGAGTTCTTATCAATTCGTCAAAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGAAGTAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTTGAAGGTACTATCGACGAGGCTGTTTCACGAGTTCTATCCATGGTTGATTCTCCGGATGCTCGTCTGCAATATCACCGCATGCTTGAAGGCTTTCGAGAAGCTAAGGCTGAACTCAATGGCGCTGGTGGCGAAACTGCAGCATCGACTTCTCTCGGTGATGTTTCTGGAATGGAAGATTGTAATCAATATCCCAAGTTTGTATAG 2556 41.74 MGGIGIGNFQNRNLALLAKWIWRFLHEENSLWHKLIVAKYYNSELPSLWPSIIQKSSHKSPWRFITSTIDLVSSRVKRRLGNGLATSFWHDSSLSCGVLATNFPRLYRLTDRPRSLVGETWIATQSAWDLNLRRNLNDVETEEWMDLSLILSSIRLQNRNDSWIWPLESSNIFSVKPLMEDLVDRPNMANDLYKVIWSDFYPKKIKIFLWELSHGAVNTADRLQRRMPHFHLSPSWCIMCAASSEHPRHLFVHCTFASRYWSEILDAFGWSIVFPNCIKDVLTLIFVDHPFRGEKKILWLALNRVIIIGSFLCDPSESPWACMFGDIEVPLQIIQNGVLCCEAPPHLPGKVSFCITSGNREPCSEYREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSSMQKSDKIDSEVRSNNLKAGDDQWSSLIESLLVGSQTPSATIDWLLQELLKDKLHLWLSSQRKDGRDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPSSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGEFKGSAEVEAEMTANCISKGNLPYTEDYIPLKNTLAAVRNASQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARLQYHRMLEGFREAKAELNGAGGETAASTSLGDVSGMEDCNQYPKFV 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38305579 38311335 - Maker00013870 Lcy3g1256 628448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1256 851 ProSiteProfiles IQ motif profile. 690 719 - -
Lcy3g1256 851 Gene3D - 690 737 - -
Lcy3g1256 851 SMART iq_5 689 711 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 SMART iq_5 712 734 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 SMART iq_5 632 654 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 Pfam IQ calmodulin-binding motif 715 734 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 Pfam IQ calmodulin-binding motif 692 710 IPR000048 GO:0005515(InterPro)
Lcy3g1256 851 Pfam Ankyrin repeats (3 copies) 489 575 IPR002110 GO:0005515(InterPro)
Lcy3g1256 851 Gene3D - 376 581 IPR036770 -
Lcy3g1256 851 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 304 819 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy3g1256 851 ProSiteProfiles Ankyrin repeat profile. 516 548 IPR002110 GO:0005515(InterPro)
Lcy3g1256 851 Pfam zinc-binding in reverse transcriptase 173 261 IPR026960 -
Lcy3g1256 851 ProSiteProfiles IQ motif profile. 633 661 - -
Lcy3g1256 851 ProSiteProfiles Ankyrin repeat region circular profile. 516 542 - -
Lcy3g1256 851 SUPERFAMILY Ankyrin repeat 486 577 IPR036770 -
Lcy3g1256 851 ProSiteProfiles IQ motif profile. 713 737 - -
Lcy3g1256 851 Gene3D Immunoglobulins 301 375 IPR013783 -
Lcy3g1256 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 741 IPR027417 -
Lcy3g1256 851 SUPERFAMILY E set domains 304 371 IPR014756 -
Lcy3g1256 851 FunFam Calmodulin-binding transcription activator 2 689 737 - -
Lcy3g1256 851 SMART ANK_2a 516 545 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1256 K21596 - - csv:101222798 955.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0790 Lcy-Chr12:10281141 Lcy3g1256 Lcy-Chr3:38305579 7.46E-66 dispersed
Lcy3g1256 Lcy-Chr3:38305579 Lcy6g0848 Lcy-Chr6:8547665 4.86E-181 dispersed
Lcy6g1030 Lcy-Chr6:11166738 Lcy3g1256 Lcy-Chr3:38305579 1.61E-43 dispersed
Lcy9g1130 Lcy-Chr9:35235509 Lcy3g1256 Lcy-Chr3:38305579 2.53E-08 dispersed
Lcy3g1256 Lcy-Chr3:38305579 Lcy3g1260 Lcy-Chr3:38323246 3.80E-101 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43