Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1261 CTATCGGGTGCCGCCGACCAGCCACTACCGTCGACCTCTGACTACCGGGAGCCGCCGACCTCCGCTGACTGGCATATGTCGATTGATCGTCACCGTCGACCTTCGACTACAGACCGCCACCGTCGACCTCTGACTACTGGCCTTCGCCTACCGACTACCACTTTCGGCCTCGGATTACTGTCAACCTCCGACTACTGGGCACCGCAGACCAGCCGCTACTGTCGACTAATGACTACCGGGTGTCGCCGACCTCTACTAACCGACCGCCACAGTCGACCTCCGACTACTGGGCACTGTCGATCTCCGTCAACCTCTGACTACCGGTCGTCGTCGACTTTCGCTGATCGGCTTTCGCCGACTGACCGCCATCGACCTCCGTCAACCAGCTGCTACAGTCGACCTCTGACTACAAGATGCCATCGTCGACTTCCGATTACCGGTCACCACTATCGTCGTCGACCGAAACTTTTTCCTTTTTTTCTTATTTTTGACGACCGCCGCCACCTGCCGACGACTTTTCCAGCATTCGCCGAGTGGTCGGAGGCTTCTTGTGTCCATTTTCGATTTTTCTGTGTACACAAAACCGAAGTGCACAGGAAGACGGAAGCTCCATCTGTGGAATGTGAAAGTCAATTCTACATCTCCGATTTTCAGCTCCTCGGTGATCCGGCGAAGGACTTTCCGGCGTCGGCACCGCCGGCAAAGTTTCACCTCCGATCTCTTCTCTCTTCTGCAGTTCGGAACAGTCGTGCTTCTGCTGCAAAAGCTCAAGTTGAGCCTCTACTCTTCAATTTCGAAGGAATTGGAAATGTTCTCTTTCACTTCTTCTCGCTGAAAGAGCTGACGGGATCTGTACATCATGAACGCCGTTCTAGTAACATAAGCTCAGCTGTTTCGAGATATAATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAGGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACCAGTGGTTCTTTGTTTCTTTTCAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGCGGAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAGCGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGAACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAATCATGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGATGGTTCAAAATTATTTGACTGAACTTCCAATTATGCTTTTGAAAATGAATTCTCCATGCTTCTTGGCTGGTGAGGCCAACCTCTGGTATTTGAAATGGTTTATGGTTTCTGGGAGGAGGTTTCGAGCTATTGCACTTTTGGATCTTTGCTAA 1428 49.23 LSGAADQPLPSTSDYREPPTSADWHMSIDRHRRPSTTDRHRRPLTTGLRLPTTTFGLGLLSTSDYWAPQTSRYCRLMTTGCRRPLLTDRHSRPPTTGHCRSPSTSDYRSSSTFADRLSPTDRHRPPSTSCYSRPLTTRCHRRLPITGHHYRRRPKLFPFFLIFDDRRHLPTTFPAFAEWSEASCVHFRFFCVHKTEVHRKTEAPSVECESQFYISDFQLLGDPAKDFPASAPPAKFHLRSLLSSAVRNSRASAAKAQVEPLLFNFEGIGNVLFHFFSLKELTGSVHHERRSSNISSAVSRYNINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGENNPNFQRRSYWMLDQSCDHIVLVHYRDISEMVQNYLTELPIMLLKMNSPCFLAGEANLWYLKWFMVSGRRFRAIALLDLC 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38326810 38335483 - Maker00013625 Lcy3g1261 628453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1261 475 MobiDBLite consensus disorder prediction 85 133 - -
Lcy3g1261 475 ProSiteProfiles CG-1 DNA-binding domain profile. 303 429 IPR005559 GO:0003677(InterPro)
Lcy3g1261 475 MobiDBLite consensus disorder prediction 1 48 - -
Lcy3g1261 475 SMART CG_1_2 306 424 IPR005559 GO:0003677(InterPro)
Lcy3g1261 475 MobiDBLite consensus disorder prediction 1 18 - -
Lcy3g1261 475 MobiDBLite consensus disorder prediction 96 116 - -
Lcy3g1261 475 MobiDBLite consensus disorder prediction 23 45 - -
Lcy3g1261 475 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 301 425 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy3g1261 475 Pfam CG-1 domain 309 422 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1261 K21596 - - csv:101222798 259.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1312 Lcy-Chr11:36603617 Lcy3g1261 Lcy-Chr3:38326810 5.56E-26 dispersed
Lcy3g1261 Lcy-Chr3:38326810 Lcy6g1070 Lcy-Chr6:11814030 2.26E-25 dispersed
Lcy3g1261 Lcy-Chr3:38326810 Lcy4g0249 Lcy-Chr4:3037982 1.37E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015537 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 0 0 7