Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1261 CTATCGGGTGCCGCCGACCAGCCACTACCGTCGACCTCTGACTACCGGGAGCCGCCGACCTCCGCTGACTGGCATATGTCGATTGATCGTCACCGTCGACCTTCGACTACAGACCGCCACCGTCGACCTCTGACTACTGGCCTTCGCCTACCGACTACCACTTTCGGCCTCGGATTACTGTCAACCTCCGACTACTGGGCACCGCAGACCAGCCGCTACTGTCGACTAATGACTACCGGGTGTCGCCGACCTCTACTAACCGACCGCCACAGTCGACCTCCGACTACTGGGCACTGTCGATCTCCGTCAACCTCTGACTACCGGTCGTCGTCGACTTTCGCTGATCGGCTTTCGCCGACTGACCGCCATCGACCTCCGTCAACCAGCTGCTACAGTCGACCTCTGACTACAAGATGCCATCGTCGACTTCCGATTACCGGTCACCACTATCGTCGTCGACCGAAACTTTTTCCTTTTTTTCTTATTTTTGACGACCGCCGCCACCTGCCGACGACTTTTCCAGCATTCGCCGAGTGGTCGGAGGCTTCTTGTGTCCATTTTCGATTTTTCTGTGTACACAAAACCGAAGTGCACAGGAAGACGGAAGCTCCATCTGTGGAATGTGAAAGTCAATTCTACATCTCCGATTTTCAGCTCCTCGGTGATCCGGCGAAGGACTTTCCGGCGTCGGCACCGCCGGCAAAGTTTCACCTCCGATCTCTTCTCTCTTCTGCAGTTCGGAACAGTCGTGCTTCTGCTGCAAAAGCTCAAGTTGAGCCTCTACTCTTCAATTTCGAAGGAATTGGAAATGTTCTCTTTCACTTCTTCTCGCTGAAAGAGCTGACGGGATCTGTACATCATGAACGCCGTTCTAGTAACATAAGCTCAGCTGTTTCGAGATATAATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAGGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACCAGTGGTTCTTTGTTTCTTTTCAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGCGGAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAGCGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGAACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAATCATGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGATGGTTCAAAATTATTTGACTGAACTTCCAATTATGCTTTTGAAAATGAATTCTCCATGCTTCTTGGCTGGTGAGGCCAACCTCTGGTATTTGAAATGGTTTATGGTTTCTGGGAGGAGGTTTCGAGCTATTGCACTTTTGGATCTTTGCTAA 1428 49.23 LSGAADQPLPSTSDYREPPTSADWHMSIDRHRRPSTTDRHRRPLTTGLRLPTTTFGLGLLSTSDYWAPQTSRYCRLMTTGCRRPLLTDRHSRPPTTGHCRSPSTSDYRSSSTFADRLSPTDRHRPPSTSCYSRPLTTRCHRRLPITGHHYRRRPKLFPFFLIFDDRRHLPTTFPAFAEWSEASCVHFRFFCVHKTEVHRKTEAPSVECESQFYISDFQLLGDPAKDFPASAPPAKFHLRSLLSSAVRNSRASAAKAQVEPLLFNFEGIGNVLFHFFSLKELTGSVHHERRSSNISSAVSRYNINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGENNPNFQRRSYWMLDQSCDHIVLVHYRDISEMVQNYLTELPIMLLKMNSPCFLAGEANLWYLKWFMVSGRRFRAIALLDLC 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38326810 38335483 - Maker00013625 Lcy3g1261 628453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1261 475 MobiDBLite consensus disorder prediction 85 133 - -
Lcy3g1261 475 ProSiteProfiles CG-1 DNA-binding domain profile. 303 429 IPR005559 GO:0003677(InterPro)
Lcy3g1261 475 MobiDBLite consensus disorder prediction 1 48 - -
Lcy3g1261 475 SMART CG_1_2 306 424 IPR005559 GO:0003677(InterPro)
Lcy3g1261 475 MobiDBLite consensus disorder prediction 1 18 - -
Lcy3g1261 475 MobiDBLite consensus disorder prediction 96 116 - -
Lcy3g1261 475 MobiDBLite consensus disorder prediction 23 45 - -
Lcy3g1261 475 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 301 425 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy3g1261 475 Pfam CG-1 domain 309 422 IPR005559 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1312 Lcy-Chr11:36603617 Lcy3g1261 Lcy-Chr3:38326810 5.56E-26 dispersed
Lcy3g1261 Lcy-Chr3:38326810 Lcy6g1070 Lcy-Chr6:11814030 2.26E-25 dispersed
Lcy3g1261 Lcy-Chr3:38326810 Lcy4g0249 Lcy-Chr4:3037982 1.37E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1261 K21596 - csv:101222798 259.996