Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1266 | ATGGGAAGAGGAAGAGTAGAACTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACACTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTGTCCACAAGAGAGGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCACTTGAAAGGCAACTTGATATGTCCCTAAAGCAGATTAGATCAACAAGGACTCAGTACATGTTAGATCAGCTCACTGATGTTCAACGTAAGTTAGTAGAAGGATATCAAGTAAATGCTCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTCCTGGCGATGCCTTCTTCCATCCCTTAGACTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA | 687 | 44.25 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDVQRKLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP | 228 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 38446396 | 38454700 | - | Maker00014560 | Lcy3g1266 | 628458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1266 | 228 | Pfam | K-box region | 91 | 159 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lcy3g1266 | 228 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lcy3g1266 | 228 | FunFam | MADS-box transcription factor 7 | 13 | 98 | - | - | |
| Lcy3g1266 | 228 | Coils | Coil | 126 | 146 | - | - | |
| Lcy3g1266 | 228 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 170 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy3g1266 | 228 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lcy3g1266 | 228 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy3g1266 | 228 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g0341 | Lcy-Chr3:10647189 | Lcy3g1266 | Lcy-Chr3:38446396 | 6.57E-98 | dispersed | |
| Lcy3g1266 | Lcy-Chr3:38446396 | Lcy5g2471 | Lcy-Chr5:47447574 | 5.24E-67 | dispersed | |
| Lcy3g1265 | Lcy-Chr3:38403839 | Lcy3g1266 | Lcy-Chr3:38446396 | 5.49E-26 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19838 | None | None | None | None | Lcy | TF |
Pathway information