Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1277 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTACCAGGAAGAAGGATAACAGTATGGGAGGGAATGAGGATTCTACTGAGCAAATGGATGAAGAAGCGCTTTCTAACATCACTAAGCAGAAGGTTGCTGCGGCGAAGCAGTATATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTTTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGACACAAAATGGGTGTCGATGATTTTGATTTACTAACAATTATTGGCAAAGGTGCCTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAACTTAAAAAATCAGAGATGCTTCGAAGAGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGCATCGTGAAGCTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTACCTTATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTATGTTGGAGAGATAGTTTTGGCTATTGAAAGTATTCATAAGCACAATTATATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTCGGACTATGCAAGCCATTAGATTGCAGTACACTGCAAGAACAAGATTTTGATATAGCAAGTGGCCGTAATGGAGCTGGACAGAGTGATGAGCGCAATGCAGCGCCTACACGTACTCAACAAGAGCAATTAGAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTATGGAATGGAATGCGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCTACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTTCCTGACGAGGCAAAGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTACTGTGTAATGTTAACCAGAGGCTTGGTACAAATGGCGCGGATGAAATTAAGGTTCATCCGTGGTTTGAAGGTACTGAATGGGATAGGCTATACGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCAGACTCGCAAAGCAGTTCTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCGAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATTGTCAATGATTATCAATTGCCAGGGATGGATGGCGAATCAGAGGCATCAGACACATCTGATACATCTAGTCATGGTCAGCCCACAGAAGGTAGCTTTTCGAAGTCGACCATGACTCCAGAAGGTAGCTTTTCGAAGTCAAGCTCAATGACATCTCAACCAGACGTACTTGAAAAGAGGAAAGAGTCGATGTAA 1653 41.08 MDSARSWFNKLQPRDRLRGSTRKKDNSMGGNEDSTEQMDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFDIASGRNGAGQSDERNAAPTRTQQEQLEHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISKLLCNVNQRLGTNGADEIKVHPWFEGTEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSSSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMDGESEASDTSDTSSHGQPTEGSFSKSTMTPEGSFSKSSSMTSQPDVLEKRKESM 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38645228 38653899 + Maker00013993 Lcy3g1277 628469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1277 550 MobiDBLite consensus disorder prediction 287 302 - -
Lcy3g1277 550 MobiDBLite consensus disorder prediction 495 550 - -
Lcy3g1277 550 SMART serkin_6 120 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Lcy3g1277 550 CDD STKc_NDR_like 118 483 - -
Lcy3g1277 550 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 FunFam Non-specific serine/threonine protein kinase 318 437 - -
Lcy3g1277 550 MobiDBLite consensus disorder prediction 9 30 - -
Lcy3g1277 550 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
Lcy3g1277 550 MobiDBLite consensus disorder prediction 281 302 - -
Lcy3g1277 550 MobiDBLite consensus disorder prediction 499 540 - -
Lcy3g1277 550 Pfam Protein kinase domain 122 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 Pfam Protein kinase domain 316 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 SUPERFAMILY Protein kinase-like (PK-like) 93 473 IPR011009 -
Lcy3g1277 550 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Lcy3g1277 550 CDD MobB_NDR_LATS-like 54 115 - -
Lcy3g1277 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 ProSiteProfiles Protein kinase domain profile. 120 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 Coils Coil 62 82 - -
Lcy3g1277 550 MobiDBLite consensus disorder prediction 1 42 - -
Lcy3g1277 550 Gene3D Phosphorylase Kinase; domain 1 118 203 - -
Lcy3g1277 550 Gene3D Phosphorylase Kinase; domain 1 438 448 - -
Lcy3g1277 550 Gene3D Transferase(Phosphotransferase) domain 1 318 437 - -
Lcy3g1277 550 Gene3D Transferase(Phosphotransferase) domain 1 204 269 - -
Lcy3g1277 550 SMART pkinase_C_6 420 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1277 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 487 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0382 Lcy-Chr13:4356987 Lcy3g1277 Lcy-Chr3:38645228 1.01E-264 dispersed
Lcy13g2073 Lcy-Chr13:39651446 Lcy3g1277 Lcy-Chr3:38645228 7.08E-206 dispersed
Lcy1g0090 Lcy-Chr1:816900 Lcy3g1277 Lcy-Chr3:38645228 5.09E-246 dispersed
Lcy3g1277 Lcy-Chr3:38645228 Lcy9g1957 Lcy-Chr9:44530573 3.37E-131 dispersed
Lcy3g1277 Lcy-Chr3:38645228 Lcy2g0938 Lcy-Chr2:8673721 7.49E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65785 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1277 K08790 - csv:101221720 950.658