Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1283 ATGGCGGCCTCTTCTTTTTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCCATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGCGCGAGCAACGCTTCCAAGCTTCTCGCTCAACTCCCGGCCTCCCACCGCTGCGAAGCGGCGGTCACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCTATCTACGGTTGTGTCTCGCATATTTTCGCTCTCCAACAACAGGTTATGAATCTGAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACATTACAAGAAACCCTAGTGAATTACTTTACGAAAAATCTCCATTTTATTCCGACGAGCAATTACAAGATCTTCAAAGTTGGCTTCTAGCCGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTGCGGCGGTGCCGCCGTACGTTGAGATGTGCGTCACCGATTCAAATCTCGCCGGAGATTTCTGCTACTGA 558 50.54 MAASSFSSSSPPCGACKFLRRKCVHGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAQLPASHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYITRNPSELLYEKSPFYSDEQLQDLQSWLLAESCSAAAPEFEPAAVPPYVEMCVTDSNLAGDFCY 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38744123 38745309 - Maker00013990 Lcy3g1283 628475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1283 185 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Lcy3g1283 185 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Lcy3g1283 185 Coils Coil 92 112 - -
Lcy3g1283 185 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 127 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2127 Lcy-Chr12:42574696 Lcy3g1283 Lcy-Chr3:38744123 9.98E-62 dispersed
Lcy13g0594 Lcy-Chr13:7728177 Lcy3g1283 Lcy-Chr3:38744123 2.73E-42 dispersed
Lcy13g0596 Lcy-Chr13:7782883 Lcy3g1283 Lcy-Chr3:38744123 1.70E-48 dispersed
Lcy3g1283 Lcy-Chr3:38744123 Lcy7g0903 Lcy-Chr7:9109038 1.43E-40 dispersed
Lcy3g1283 Lcy-Chr3:38744123 Lcy11g1899 Lcy-Chr11:42713862 6.03E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19840 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1283 K13945 - csv:101220863 299.671