Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1283 ATGGCGGCCTCTTCTTTTTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCCATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGCGCGAGCAACGCTTCCAAGCTTCTCGCTCAACTCCCGGCCTCCCACCGCTGCGAAGCGGCGGTCACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCTATCTACGGTTGTGTCTCGCATATTTTCGCTCTCCAACAACAGGTTATGAATCTGAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACATTACAAGAAACCCTAGTGAATTACTTTACGAAAAATCTCCATTTTATTCCGACGAGCAATTACAAGATCTTCAAAGTTGGCTTCTAGCCGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTGCGGCGGTGCCGCCGTACGTTGAGATGTGCGTCACCGATTCAAATCTCGCCGGAGATTTCTGCTACTGA 558 50.54 MAASSFSSSSPPCGACKFLRRKCVHGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAQLPASHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYITRNPSELLYEKSPFYSDEQLQDLQSWLLAESCSAAAPEFEPAAVPPYVEMCVTDSNLAGDFCY 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38744123 38745309 - Maker00013990 Lcy3g1283 628475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1283 185 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Lcy3g1283 185 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Lcy3g1283 185 Coils Coil 92 112 - -
Lcy3g1283 185 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 127 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1283 K13945 - - csv:101220863 299.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2127 Lcy-Chr12:42574696 Lcy3g1283 Lcy-Chr3:38744123 9.98E-62 dispersed
Lcy13g0594 Lcy-Chr13:7728177 Lcy3g1283 Lcy-Chr3:38744123 2.73E-42 dispersed
Lcy13g0596 Lcy-Chr13:7782883 Lcy3g1283 Lcy-Chr3:38744123 1.70E-48 dispersed
Lcy3g1283 Lcy-Chr3:38744123 Lcy7g0903 Lcy-Chr7:9109038 1.43E-40 dispersed
Lcy3g1283 Lcy-Chr3:38744123 Lcy11g1899 Lcy-Chr11:42713862 6.03E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g1549 . 1 224 AS2 family AT1G65620 66.8 5.2e-72 268.1
Lcy8g0396 . 2 110 AS2 family AT1G65620 82.6 5.3e-48 188.3
Lcy2g0127 . 3 113 AS2 family AT1G65620 74.8 5.4e-45 178.3
Lcy8g0393 . 2 110 AS2 family AT1G65620 78.0 1.6e-44 176.8
Lcy10g0181 . 3 113 AS2 family AT1G65620 70.3 3.0e-43 172.6
Lcy9g0581 . 2 110 AS2 family AT1G65620 75.2 3.9e-43 172.2
Lcy10g1903 . 1 117 AS2 family AT1G65620 69.2 1.5e-42 170.2
Lcy5g2196 . 17 121 AS2 family AT1G65620 72.4 1.2e-39 160.6
Lcy8g0393 . 1 136 AS2 family AT5G66870 78.7 3.7e-56 216.1
Lcy8g0396 . 1 128 AS2 family AT5G66870 78.7 2.4e-55 213.4
Lcy9g0581 . 1 128 AS2 family AT5G66870 78.1 6.5e-53 205.3
Lcy4g1549 . 4 112 AS2 family AT5G66870 77.1 1.2e-43 174.5
Lcy2g0127 . 1 113 AS2 family AT5G66870 69.0 1.1e-39 161.4
Lcy10g0181 . 7 113 AS2 family AT5G66870 68.2 4.1e-39 159.5
Lcy10g1903 . 1 115 AS2 family AT5G66870 64.3 1.2e-38 157.9
Lcy5g2196 . 17 121 AS2 family AT5G66870 68.6 5.0e-37 152.5
Lcy10g2185 . 9 115 AS2 family AT5G66870 65.4 1.1e-36 151.4
Lcy8g0396 . 4 118 AS2 family AT2G23660 69.6 3.2e-44 176.4
Lcy8g0393 . 6 149 AS2 family AT2G23660 59.7 6.1e-43 172.2
Lcy9g0581 . 6 118 AS2 family AT2G23660 68.1 2.3e-42 170.2
Lcy4g1549 . 6 112 AS2 family AT2G23660 69.2 1.1e-39 161.4
Lcy2g0127 . 8 113 AS2 family AT2G23660 65.1 9.1e-39 158.3
Lcy10g0181 . 7 123 AS2 family AT2G23660 58.1 2.9e-37 153.3
Lcy10g1903 . 4 127 AS2 family AT3G27650 80.8 1.8e-54 209.5
Lcy10g0181 . 4 114 AS2 family AT3G27650 84.7 2.8e-52 202.2
Lcy2g0127 . 4 114 AS2 family AT3G27650 79.3 9.4e-48 187.2
Lcy5g2196 . 17 122 AS2 family AT3G27650 75.5 9.1e-43 170.6
Lcy4g1549 . 3 112 AS2 family AT3G27650 67.3 5.0e-41 164.9
Lcy8g0396 . 4 112 AS2 family AT3G27650 67.0 1.2e-39 160.2
Lcy9g0581 . 6 112 AS2 family AT3G27650 65.4 4.4e-37 151.8
Lcy8g0393 . 6 112 AS2 family AT3G27650 64.5 9.7e-37 150.6
Lcy2g0127 . 3 113 AS2 family AT5G63090 94.6 2.0e-57 219.5
Lcy10g0181 . 2 125 AS2 family AT5G63090 78.2 7.3e-52 201.1
Lcy10g1903 . 1 120 AS2 family AT5G63090 81.5 1.1e-50 197.2
Lcy5g2196 . 15 121 AS2 family AT5G63090 82.2 9.9e-49 190.7
Lcy4g1549 . 1 122 AS2 family AT5G63090 70.2 8.7e-45 177.6
Lcy8g0396 . 2 110 AS2 family AT5G63090 70.6 1.7e-40 163.3
Lcy5g1567 . 11 122 AS2 family AT5G63090 66.1 4.2e-39 158.7
Lcy8g1638 . 12 115 AS2 family AT5G63090 68.3 2.1e-38 156.4
Lcy7g1019 . 4 106 AS2 family AT5G63090 69.9 1.8e-37 153.3
Lcy9g0581 . 6 110 AS2 family AT5G63090 68.6 2.3e-37 152.9
Lcy4g0786 . 14 117 AS2 family AT5G63090 66.3 5.1e-37 151.8
Lcy8g0393 . 6 110 AS2 family AT5G63090 67.6 5.1e-37 151.8
Lcy7g1019 . 3 114 AS2 family AT2G30130 92.0 3.7e-54 208.8
Lcy8g1716 . 2 115 AS2 family AT2G30130 78.1 3.9e-48 188.7
Lcy8g1638 . 12 123 AS2 family AT2G30130 75.0 3.1e-45 179.1
Lcy5g1567 . 9 126 AS2 family AT2G30130 69.5 1.5e-44 176.8
Lcy4g0786 . 9 129 AS2 family AT2G30130 70.2 6.5e-43 171.4
Lcy2g0127 . 8 111 AS2 family AT2G30130 68.3 1.8e-37 153.3
Lcy10g2164 . 44 146 AS2 family AT2G30130 69.9 5.3e-37 151.8
Lcy4g1549 . 7 109 AS2 family AT2G30130 67.0 1.2e-36 150.6
Lcy10g0181 . 8 111 AS2 family AT2G30130 65.4 1.5e-36 150.2
Lcy5g1567 . 1 167 AS2 family AT1G31320 75.9 5.2e-68 254.6
Lcy8g1638 . 1 168 AS2 family AT1G31320 73.1 3.5e-64 241.9
Lcy4g0786 . 11 156 AS2 family AT1G31320 58.8 5.0e-47 184.9
Lcy7g1019 . 2 122 AS2 family AT1G31320 68.3 4.0e-44 175.3
Lcy8g1716 . 6 122 AS2 family AT1G31320 65.0 2.7e-40 162.5
Lcy10g2164 . 44 153 AS2 family AT1G31320 63.6 8.1e-37 151.0
Lcy2g0127 . 9 120 AS2 family AT1G31320 62.5 1.4e-36 150.2
Lcy7g0815 . 52 143 AS2 family AT2G28500 88.0 5.0e-42 168.7
Lcy11g0364 . 35 127 AS2 family AT2G28500 82.8 3.3e-41 166.0
Lcy8g1878 . 33 195 AS2 family AT2G28500 51.6 3.6e-40 162.5
Lcy8g1716 . 6 116 AS2 family AT2G28500 62.2 9.8e-38 154.5
Lcy11g0363 . 25 115 AS2 family AT2G28500 76.9 1.7e-37 153.7
Lcy10g1785 . 11 133 AS2 family AT2G28500 60.2 4.9e-37 152.1
Lcy7g1019 . 5 113 AS2 family AT2G28500 66.1 1.1e-36 151.0
Lcy8g1638 . 11 120 AS2 family AT2G28500 66.4 1.1e-36 151.0
Lcy4g0786 . 14 128 AS2 family AT2G28500 66.1 1.4e-36 150.6
Lcy7g0815 . 52 206 AS2 family AT1G07900 68.8 9.8e-44 174.1
Lcy8g1878 . 33 194 AS2 family AT1G07900 66.3 9.8e-44 174.1
Lcy11g0364 . 22 153 AS2 family AT1G07900 75.8 9.8e-44 174.1
Lcy11g0363 . 25 141 AS2 family AT1G07900 76.9 5.6e-39 158.3
Lcy10g1785 . 5 102 AS2 family AT1G07900 69.4 1.1e-37 154.1
Lcy8g1638 . 1 168 AS2 family AT1G16530 58.3 1.1e-46 183.7
Lcy4g0786 . 14 156 AS2 family AT1G16530 57.1 1.0e-41 167.2
Lcy5g1567 . 10 167 AS2 family AT1G16530 54.7 1.4e-41 166.8
Lcy7g1019 . 5 110 AS2 family AT1G16530 68.2 3.5e-37 152.1
Lcy10g2164 . 9 153 AS2 family AT2G30340 73.5 2.9e-57 219.5
Lcy7g1059 . 9 167 AS2 family AT2G30340 66.5 1.5e-53 207.2
Lcy8g1638 . 9 120 AS2 family AT2G30340 60.7 1.6e-36 150.6
Lcy5g1567 . 12 113 AS2 family AT2G30340 68.6 2.1e-36 150.2
Lcy10g2164 . 30 159 AS2 family AT2G40470 85.8 4.6e-60 228.4
Lcy7g1059 . 37 188 AS2 family AT2G40470 74.7 4.8e-57 218.4
Lcy8g1638 . 9 133 AS2 family AT2G40470 60.3 4.8e-41 165.2
Lcy4g0786 . 14 144 AS2 family AT2G40470 57.9 2.6e-39 159.5
Lcy5g1567 . 12 122 AS2 family AT2G40470 65.8 4.5e-39 158.7
Lcy8g1716 . 6 123 AS2 family AT2G40470 57.6 1.6e-36 150.2
Lcy10g2185 . 1 120 AS2 family AT3G11090 78.3 2.2e-47 186.0
Lcy12g2127 . 1 145 AS2 family AT2G42440 66.9 5.8e-49 191.8
Lcy3g1283 . 7 146 AS2 family AT2G42440 62.1 2.6e-41 166.4
Lcy12g2128 . 26 136 AS2 family AT2G42440 66.7 1.2e-38 157.5
Lcy13g0596 . 25 134 AS2 family AT2G42440 65.2 3.0e-37 152.9
Lcy12g2127 . 4 117 AS2 family AT3G58190 83.3 2.5e-51 199.5
Lcy3g1283 . 4 141 AS2 family AT3G58190 68.3 6.4e-47 184.9
Lcy12g2128 . 24 136 AS2 family AT3G58190 69.9 2.8e-42 169.5
Lcy13g0596 . 25 123 AS2 family AT3G58190 74.7 5.8e-40 161.8
Lcy11g0522 . 40 157 AS2 family AT3G58190 62.7 2.1e-37 153.3
Lcy7g0903 . 12 121 AS2 family AT3G58190 65.5 6.0e-37 151.8
Lcy11g1899 . 19 130 AS2 family AT3G58190 64.3 7.8e-37 151.4
Lcy12g2127 . 1 145 AS2 family AT2G31310 57.5 4.1e-42 168.7
Lcy12g2128 . 24 236 AS2 family AT2G42430 55.0 7.1e-55 211.5
Lcy12g2127 . 3 109 AS2 family AT2G42430 73.8 2.0e-41 166.8
Lcy13g0596 . 25 127 AS2 family AT2G42430 74.8 1.3e-40 164.1
Lcy11g1899 . 6 121 AS2 family AT2G42430 65.5 2.7e-38 156.4
Lcy11g0522 . 39 155 AS2 family AT2G42430 64.1 4.7e-38 155.6
Lcy3g1283 . 12 114 AS2 family AT2G42430 70.9 8.8e-37 151.4
Lcy13g0596 . 25 235 AS2 family AT4G00220 58.2 5.8e-59 224.9
Lcy11g1899 . 19 181 AS2 family AT4G00220 58.3 3.3e-46 182.6
Lcy13g0594 . 115 202 AS2 family AT4G00220 79.5 1.6e-37 153.7
Lcy13g0596 . 25 235 AS2 family AT2G45420 69.2 1.4e-72 270.4
Lcy11g1899 . 19 191 AS2 family AT2G45420 56.6 3.0e-51 199.5
Lcy12g2128 . 30 132 AS2 family AT2G45420 77.7 7.4e-42 168.3
Lcy11g0522 . 40 146 AS2 family AT2G45420 74.8 2.2e-41 166.8
Lcy13g0594 . 115 204 AS2 family AT2G45420 82.2 1.1e-40 164.5
Lcy12g2127 . 7 109 AS2 family AT2G45420 72.8 5.3e-40 162.2
Lcy3g1283 . 12 118 AS2 family AT2G45420 68.2 3.4e-39 159.5
Lcy11g0522 . 40 153 AS2 family AT3G03760 86.8 1.2e-50 197.6
Lcy13g0596 . 25 126 AS2 family AT3G03760 81.4 1.5e-40 164.1
Lcy12g2127 . 2 111 AS2 family AT3G03760 69.1 8.8e-38 154.8
Lcy12g2128 . 26 143 AS2 family AT3G03760 66.1 1.2e-37 154.5
Lcy11g1899 . 11 125 AS2 family AT3G03760 67.0 2.6e-37 153.3
Lcy13g0596 . 25 134 AS2 family AT4G00210 73.9 1.9e-43 173.3
Lcy11g1899 . 18 152 AS2 family AT4G00210 58.8 3.4e-40 162.5
Lcy3g1283 . 12 116 AS2 family AT4G00210 67.6 1.1e-38 157.5
Lcy12g2127 . 2 107 AS2 family AT4G00210 67.9 1.9e-38 156.8
Lcy11g0522 . 40 141 AS2 family AT4G00210 72.5 3.5e-37 152.5
Lcy12g2128 . 24 132 AS2 family AT4G00210 63.3 1.0e-36 151.0
Lcy11g1899 . 12 137 AS2 family AT2G45410 64.6 8.9e-45 177.6
Lcy11g0522 . 40 169 AS2 family AT2G45410 59.2 3.1e-37 152.5
Lcy12g2127 . 3 102 AS2 family AT2G45410 68.0 3.1e-37 152.5
Lcy7g0903 . 14 124 AS2 family AT5G06080 73.0 3.1e-44 175.6
Lcy3g2218 . 37 145 AS2 family AT3G13850 74.3 9.0e-43 171.4
Lcy12g0154 . 1 162 AS2 family AT1G68510 65.9 2.7e-59 226.1
Lcy7g0468 . 1 134 AS2 family AT1G68510 65.9 9.5e-49 191.0
Lcy2g0439 . 1 190 AS2 family AT1G68510 51.0 1.6e-48 190.3
Lcy1g0925 . 1 104 AS2 family AT1G68510 62.5 1.5e-38 157.1
Lcy2g0439 . 1 165 AS2 family AT1G67100 61.7 3.1e-55 212.6
Lcy7g0468 . 1 131 AS2 family AT1G67100 66.9 6.6e-50 194.9
Lcy1g0925 . 1 110 AS2 family AT1G67100 66.4 7.0e-44 174.9
Lcy9g2044 . 1 110 AS2 family AT1G67100 63.6 3.1e-39 159.5
Lcy12g0154 . 1 300 AS2 family AT3G02550 55.8 2.0e-79 293.1
Lcy2g0439 . 1 192 AS2 family AT3G02550 60.0 1.5e-58 223.8
Lcy7g0468 . 1 140 AS2 family AT3G02550 64.8 1.7e-49 193.7
Lcy1g0925 . 1 104 AS2 family AT3G02550 68.3 2.0e-39 160.2
Lcy9g2044 . 1 110 AS2 family AT3G02550 63.6 9.4e-37 151.4
Lcy1g0925 . 1 237 AS2 family AT5G67420 59.4 1.9e-71 266.5
Lcy9g2044 . 1 127 AS2 family AT5G67420 66.7 6.6e-48 188.3
Lcy12g0154 . 3 112 AS2 family AT5G67420 67.3 4.4e-44 175.6
Lcy7g0468 . 3 106 AS2 family AT5G67420 64.4 1.2e-38 157.5
Lcy1g0925 . 1 237 AS2 family AT3G49940 58.3 2.3e-69 259.6
Lcy9g2044 . 1 206 AS2 family AT3G49940 51.0 2.7e-49 193.0
Lcy12g0154 . 3 157 AS2 family AT3G49940 53.5 5.2e-45 178.7
Lcy7g0468 . 3 106 AS2 family AT3G49940 66.3 9.4e-39 157.9
Lcy1g0925 . 1 237 AS2 family AT4G37540 55.1 2.3e-66 249.6
Lcy9g2044 . 1 208 AS2 family AT4G37540 50.2 2.3e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009687 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19840 None None None None Lcy TF