Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1285 ATGAAAAACCATATGATTGCTGATGCGTTGAATCCTTCTGGGAGCTCTACATCCTATTTGTTGGATTTCCATTGTTCTTTGACCAGTAGGGAAATGATGGAGGTTACTACTCTTGTCTTTGATAGGGGATTAAATAGGAAACTTAAAGATCAATCTACATTTCATGCACTTTTTCAGGTTCTATATCAGTCCGATCAGTTTTTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTAAGTGCTTCAAATTGTCCTTTTGTTGCTGGCCTTTTCCCTCCTTTTCCTGAGGAGGCGGCCAAGTCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTAATGGAAACATTAAATTCGACAGAACCCCATTATATAAGATGCGTGAAGCCCAATACTATCCTACAACCTGCCATATTTGAGAATGCTACTGTTATGCAACAATTACGTTGTGGTGGTGTTTTGGAGGCAGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGTTTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGTAGCCTGCGAAAAGATTCTAGAGAAGATAGGACTTAAAGGTTATCTGATAGGGAAATCAAAACTTTTCCTAAGAGGTAATATGATGGCTGAACTAGATGCACAAAGAACAAGAATATATAGTGCAGCTGCCATAGCTATACAGAAGCATGTTAAAGGTCGAATTGATCGTAAAAAGTACATTGCTATGAGAAGAAGTTGCATTCGTCTACAATCATATTGGAGAGGTGTTCTTGCTCGTGAGTCATATGAAATTATGAGAAGGGAAGCAGCTGCCATCAAAATTCAAAAGAATATTCGTGGATACCTTGCTAGGAAAGTCCGTGTTAAAACAAGGATCTCTACAGTTGTTCTTCAGGCTGGTATGCGAGCAATGGTTGCTCGGAGTGAATACAGACATAGGAGACAGGTTAAGGCTGCAATAGTTATTCAATCTTATTGGCGTCAGTATAGAACCTCTTCAGAGTATAGGATGACTAGAAAATCATCAACAAGTTCACAATGCGGATCTAACACAAGAATTGCTGGTGAAGGTCTTAAGAAGCAAAGGATGACTAACTTGGAAGAAACAGAGGAGGATCTGGTCATGCCTTCTTCGTTGCTCGATAGCAGTACAGACAGCATTGATGAAACAATTGAAATGATTGCCAAGGAAAGCCAAGTTTCTCCGCAAGAAGTAGAAGAAGCATACTTTATTATTAAAGAGCCCGCTAGTCCAGTTAAAGATGAAGAAAAGGTGGTGACTCTCAGAGCAGAAGTGGCTAATCTAAAGCTTGCATTGTCGTCCCAGCTTGGTTCGTGTAGGTGTACCTTCGTCCTCGCCGCAACCCACATTCTTCGACCCACTACCCGCGACTCTGTCTGCGACCTCGATAACTTTCAACCGTGCCGTCCTTCAACCGCTCCGTCCACCAGCTTCTCCGTTCGTCTATTCGTTGTTGTCGCCGTCGGTCTCCCTGTCAATTTGTTGAAGTGGTTTGAAAGCTCGTTAGTTGAAATGATGCTTTTACCATCATATTGGCGCTTTCGTAAGAAAAATAGGGATGATTTTGGGGTCACTCGTTTATCAAAATTTAAATCTTTTGCTGGTTGGAACATTGAATGTGCAGTTTGGCCACCTACTGGAGGTCGTAAGTTCATTCAAGTGCCTATGTGGACCTCGAAAAGAGGATGGCTTATCTTTTGGGAAATGTTAAGAGACTTCCTCTTAAAGTTTGAAGTTATGAATCAATATGAAAAGACTCCTCCTAATCCATCATCGATCAAAGTCAATTCCATTGATAGGAACTACGCAGATATAGTTTCATCGAATATAAAGGAGTTCAATGCAGTACATCAGATGAATCCAGTGAAAGAGAATTTTGTTTCAATTAACACTATGGAACTAGAACATATCACCCGGGTTATTTGGAGGGATATGGCGGGTGGATATCGATCAAGAACTTGCCCTTGCCCCACTGGAAGCGTCAATCTTTCGAAGCAATTGGGAAATATTTTGGTGGTTTGA 2109 40.64 MKNHMIADALNPSGSSTSYLLDFHCSLTSREMMEVTTLVFDRGLNRKLKDQSTFHALFQVLYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPFPEEAAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTILQPAIFENATVMQQLRCGGVLEAVRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEKVACEKILEKIGLKGYLIGKSKLFLRGNMMAELDAQRTRIYSAAAIAIQKHVKGRIDRKKYIAMRRSCIRLQSYWRGVLARESYEIMRREAAAIKIQKNIRGYLARKVRVKTRISTVVLQAGMRAMVARSEYRHRRQVKAAIVIQSYWRQYRTSSEYRMTRKSSTSSQCGSNTRIAGEGLKKQRMTNLEETEEDLVMPSSLLDSSTDSIDETIEMIAKESQVSPQEVEEAYFIIKEPASPVKDEEKVVTLRAEVANLKLALSSQLGSCRCTFVLAATHILRPTTRDSVCDLDNFQPCRPSTAPSTSFSVRLFVVVAVGLPVNLLKWFESSLVEMMLLPSYWRFRKKNRDDFGVTRLSKFKSFAGWNIECAVWPPTGGRKFIQVPMWTSKRGWLIFWEMLRDFLLKFEVMNQYEKTPPNPSSIKVNSIDRNYADIVSSNIKEFNAVHQMNPVKENFVSINTMELEHITRVIWRDMAGGYRSRTCPCPTGSVNLSKQLGNILVV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38810644 38823387 - Maker00014770 Lcy3g1285 628477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1285 702 ProSiteProfiles IQ motif profile. 289 316 - -
Lcy3g1285 702 SMART iq_5 240 262 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 SMART iq_5 336 358 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 SMART iq_5 311 333 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 SMART iq_5 263 285 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 SMART iq_5 288 310 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 291 IPR027417 -
Lcy3g1285 702 ProSiteProfiles IQ motif profile. 337 366 - -
Lcy3g1285 702 Pfam IQ calmodulin-binding motif 339 358 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 Pfam IQ calmodulin-binding motif 243 261 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 Pfam IQ calmodulin-binding motif 291 307 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 Pfam IQ calmodulin-binding motif 265 284 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 Pfam IQ calmodulin-binding motif 315 333 IPR000048 GO:0005515(InterPro)
Lcy3g1285 702 PANTHER MYOSIN 58 439 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Lcy3g1285 702 Gene3D Kinesin motor domain 33 171 IPR036961 -
Lcy3g1285 702 Gene3D - 172 239 - -
Lcy3g1285 702 ProSiteProfiles Myosin motor domain profile. 1 238 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lcy3g1285 702 ProSiteProfiles IQ motif profile. 241 267 - -
Lcy3g1285 702 Gene3D - 292 341 - -
Lcy3g1285 702 Gene3D - 241 291 - -
Lcy3g1285 702 ProSiteProfiles IQ motif profile. 312 341 - -
Lcy3g1285 702 Pfam Myosin head (motor domain) 55 226 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lcy3g1285 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 364 IPR027417 -
Lcy3g1285 702 SMART MYSc_2a 1 239 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Lcy3g1285 702 ProSiteProfiles IQ motif profile. 264 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1285 Lcy-Chr3:38810644 Lcy5g2604 Lcy-Chr5:48712834 8.18E-79 dispersed
Lcy11g1722 Lcy-Chr11:41071440 Lcy3g1285 Lcy-Chr3:38810644 1.79E-86 transposed
Lcy13g2224 Lcy-Chr13:41111268 Lcy3g1285 Lcy-Chr3:38810644 1.17E-75 transposed
Lcy2g0944 Lcy-Chr2:8748138 Lcy3g1285 Lcy-Chr3:38810644 1.10E-92 transposed
Lcy3g1429 Lcy-Chr3:41012173 Lcy3g1285 Lcy-Chr3:38810644 6.66E-81 transposed
Lcy3g1965 Lcy-Chr3:46777971 Lcy3g1285 Lcy-Chr3:38810644 1.71E-89 transposed
Lcy4g2008 Lcy-Chr4:46557902 Lcy3g1285 Lcy-Chr3:38810644 2.69E-94 transposed
Lcy6g0005 Lcy-Chr6:82304 Lcy3g1285 Lcy-Chr3:38810644 4.20E-74 transposed
Lcy7g0780 Lcy-Chr7:7488959 Lcy3g1285 Lcy-Chr3:38810644 5.02E-28 transposed
Lcy2g1382 Lcy-Chr2:16287880 Lcy3g1285 Lcy-Chr3:38810644 7.84E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1285 K10357 - csv:101220626 674.47