Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1286 | ATGGACGACTCTGTCAATATCGTTGTTGGTTCTCAGATATGGGTGGGAGATATAGAGTCTGTTTGGATTGATGGACTCGTATTGAACATCAATGGGGAAGATGCTGAGATCCAAACCAGTGATGGGAGACAGGTTGTTGTAAAAATGTCAAATCTATATCCAAGGGATGCAGAAACTCCATCTACTGGAATTGATGATATGACTAGAATGTCATATTTGAATGAGCCAGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAATCTGTACGATGCCTATGTGATGGAGCAGTACAAAGGAGCAAAATTTGGGGAGCTGAAGCCTCATGTATTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAACTCCATTCTTGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACGACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTAAGAAACAACAATTCAAGCACAGCCGTTTTGGGAAATTTGTTGAGATACAATTTGACAAGAATGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAATTATCATTGCTTTTATCTTCTCTGTGCGGCTCCACCTCAGGCAGATATCCCCCTTTTTTTCTTTTCTTTTCATTTTCTTTAAAATGGAGAGAGAGAGATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTAGCTGCAATTCTCCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCTGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGACTGGAGCTTTGCTTTTATCACTTTGTGTGATCCTGATGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCGGAGGAAATCATCAAGAAAAGTCTTGATCCGCTTGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTTGATAAAATCAATGTTTCCATTGGACAAGATCCTTGCTCAACATCTCTGATCGGAGTCCTTGATATTTATGGTTTTGAGAGCTTTCAAACTAATAGTTTTGAACAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTAAAAGAGGAAATTGATTGGAGCTACATTGAATTTGTTGATAATCAAGATGTCCTTGATCTCATTGAGAAGGTTCAATTTTTTCTTCTTAACTTTGCTCCTGGAGTTAAAGATGCCACTCACAACTTATGCTATTGCTTTCTCTTCATTTAA | 1656 | 38.29 | MDDSVNIVVGSQIWVGDIESVWIDGLVLNINGEDAEIQTSDGRQVVVKMSNLYPRDAETPSTGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISNLYDAYVMEQYKGAKFGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSTAVLGNLLRYNLTRMEEYQELPSELIFLRDHGFAKYQTLSAIIIAFIFSVRLHLRQISPFFSFLFIFFKMERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFVKDEESKFHLHMTAELLMCDWSFAFITLCDPDALEDALCKRMMITPEEIIKKSLDPLGATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPCSTSLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKVQFFLLNFAPGVKDATHNLCYCFLFI | 551 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 38842502 | 38848990 | - | Maker00014386 | Lcy3g1286 | 628478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1286 | 551 | Pfam | Myosin head (motor domain) | 280 | 527 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | Pfam | Myosin head (motor domain) | 65 | 213 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | Pfam | Myosin N-terminal SH3-like domain | 10 | 49 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | ProSiteProfiles | Myosin motor domain profile. | 62 | 551 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | FunFam | Myosin 2 | 329 | 454 | - | - | |
| Lcy3g1286 | 551 | Gene3D | Kinesin motor domain | 31 | 232 | IPR036961 | - | |
| Lcy3g1286 | 551 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 330 | 472 | - | - | |
| Lcy3g1286 | 551 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | Gene3D | - | 273 | 327 | - | - | |
| Lcy3g1286 | 551 | PRINTS | Myosin heavy chain signature | 456 | 484 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | PRINTS | Myosin heavy chain signature | 509 | 537 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1286 | 551 | Gene3D | - | 473 | 537 | - | - | |
| Lcy3g1286 | 551 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 36 | 526 | IPR027417 | - | |
| Lcy3g1286 | 551 | PANTHER | MYOSIN | 283 | 525 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy3g1286 | 551 | SMART | MYSc_2a | 56 | 548 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1286 | Lcy-Chr3:38842502 | Lcy4g2008 | Lcy-Chr4:46557902 | 7.68E-219 | dispersed | |
| Lcy3g1286 | Lcy-Chr3:38842502 | Lcy3g0248 | Lcy-Chr3:7827042 | 1.59E-10 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1286 | K10357 | - | csv:101220626 | 835.484 |