Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1329 | ATGGATGACGATTTTGATATCCCTGCGGCGGCTGACATGAACGAGGAGTTGGATCTTCCTGACGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTCTTAAGGAAGGTGACGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCATTATACTGGGACTTTGCTCGATGGGACTCAGTTTGATTCGAGCCGTGATCGTGGAACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAAAACGAAAAAGCTCTTTTTACCATTCCTCCTGAGCTGGCATATGGTGAATCGGGCTCCCCACCTACAATTCCTCCTAGTGCTACGTTGCAGTTTGACGTTGAACTACTATCTTGGACAAGCGTTAAGGATATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACGGAAGGGGACAAGTGGGATAATCCAAAGGACCTTGATGAAGTGCTAGGCAAGTATATATTTAATTTTGAAGCTAAGCTAGAAGATGGAACAATTGTTGCAAAAGCTGATGGAGTGGAGTTCACCGTTGGAGATGGTTACTTTTGCCCTGCTCTTGCGAAGGCTGTAAAAACCATGAAGATAGGTGAAAAGGCACTCCTCACCGTGAAACCACAATATGGTTTTGGGGAGAAAGGTAAATCAGCCTCTGGTAATGAAGGTGCAGTTCCACCAAATGCATCTCTTGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACTCCTGATAAAAAGGTTATCAAGAAAATTTTGAAAGAAGGAGAAGGGTATGAGAAGCCGAACGACGGAGCTGTTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTTTTGAAGAAGGGATATGATGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAGGAACAAGTGATTGATGGTCTCGACAAAGCTGTGGCGACAATGAAGAAAGGTGAGACAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCATCTGAGTCACAACAGGAGTTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAAGTTGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCGTGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGAAAATTTGCTAGAGCTTCCAAGCGATATGAGAAGGCTGTGAAGTACATTGAATACGATTCTTCATTTAGCGAAGAAGAGAAAAAGCAAGCAAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAACGAGGCAGAGAAATTGTGCACCAAGGTACTGGAACTCGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCTGAATTCGACATCAAGAAAGCTCTCGATATTGATCCAAATAATAGGCATGTACTCTTCCTCCCTTTCTCGAATTCGAAATACTTGCTTACTTGTATCTGA | 1614 | 42.38 | MDDDFDIPAAADMNEELDLPDETVALKVGEEKEIGNQGLKKKLLKEGDGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLGKYIFNFEAKLEDGTIVAKADGVEFTVGDGYFCPALAKAVKTMKIGEKALLTVKPQYGFGEKGKSASGNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAVVKVKLIGKLGDGKIFLKKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGETALLTIAPEYAFGSSESQQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRHVLFLPFSNSKYLLTCI | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 39591246 | 39595629 | + | Maker00014882 | Lcy3g1329 | 628521 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1329 | 537 | Gene3D | - | 266 | 387 | IPR046357 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | SUPERFAMILY | FKBP-like | 148 | 268 | - | - | |
| Lcy3g1329 | 537 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | SUPERFAMILY | FKBP-like | 32 | 161 | - | - | |
| Lcy3g1329 | 537 | Gene3D | - | 28 | 147 | IPR046357 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | SUPERFAMILY | FKBP-like | 268 | 403 | - | - | |
| Lcy3g1329 | 537 | FunFam | Peptidylprolyl isomerase | 148 | 265 | - | - | |
| Lcy3g1329 | 537 | FunFam | Peptidylprolyl isomerase | 266 | 388 | - | - | |
| Lcy3g1329 | 537 | FunFam | Peptidylprolyl isomerase | 29 | 147 | - | - | |
| Lcy3g1329 | 537 | SUPERFAMILY | TPR-like | 391 | 524 | IPR011990 | GO:0005515(InterPro) | |
| Lcy3g1329 | 537 | Gene3D | Tetratricopeptide repeat domain | 389 | 525 | IPR011990 | GO:0005515(InterPro) | |
| Lcy3g1329 | 537 | ProSiteProfiles | TPR repeat profile. | 486 | 519 | IPR019734 | GO:0005515(InterPro) | |
| Lcy3g1329 | 537 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 293 | 386 | IPR001179 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 176 | 265 | IPR001179 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | Gene3D | - | 148 | 265 | IPR046357 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | FunFam | Peptidylprolyl isomerase | 391 | 525 | - | - | |
| Lcy3g1329 | 537 | Pfam | Tetratricopeptide repeat | 486 | 519 | IPR019734 | GO:0005515(InterPro) | |
| Lcy3g1329 | 537 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 30 | 143 | IPR050754 | - | |
| Lcy3g1329 | 537 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 287 | 383 | IPR001179 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 181 | 261 | IPR001179 | GO:0003755(InterPro) | |
| Lcy3g1329 | 537 | SMART | tpr_5 | 452 | 485 | IPR019734 | GO:0005515(InterPro) | |
| Lcy3g1329 | 537 | SMART | tpr_5 | 486 | 519 | IPR019734 | GO:0005515(InterPro) | |
| Lcy3g1329 | 537 | SMART | tpr_5 | 403 | 436 | IPR019734 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1274 | Lcy-Chr11:36024958 | Lcy3g1329 | Lcy-Chr3:39591246 | 2.79E-280 | dispersed | |
| Lcy3g1329 | Lcy-Chr3:39591246 | Lcy5g0351 | Lcy-Chr5:3533089 | 7.08E-14 | dispersed | |
| Lcy3g1329 | Lcy-Chr3:39591246 | Lcy6g0242 | Lcy-Chr6:2130529 | 6.57E-20 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1329 | K09571 | - | csv:101214513 | 939.102 |