Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1330 ATGGGGAGGATTGGGCCTTTGTGGAGAGCTTTGTTGGTGGGGGATTGGCGGGTTTGGGCTTTTGTGAGTGGGCCTGTTAACACGGTATTGGGAGGACTGGGAATGAAGGATTGGTTGCTGACTATTTTGGGGTTTACTGGAGGCTGGTTGGTGGCTTGTGGACGAGGATTTTGGGGATTTGGGTTCCATGATCAAAGAGGATTTGGATATCCTGGCAGTCCACCACACAGTGGCAAGGACAGGAAATCAGAGGCTTTTGGTAATGTAGAAAAAGGGTTCATCTTACTTGTTTATAGTTTGCTGGTGCCACTATCTGTTTTGAAGGTTTACCAACAATCTATTGCAGCTGTTTGTATCCAGGATTGGCCAAAGGATAAAATGCTTGTACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAACTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGGATATTGTATAGACACCGCCTAATACGTACAGGCTACAAGGCAGGGAATCTTAAATCTGCAATGGGGTGCGATTATGTAAAAGATTATGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTCAAGGGGAATGATGAACTTGCGTTGGTCCAAACAAGGTGGACATTTGTGAACAAGGATGAAAACTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCCTGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGGGGCTGGTTAGAAAGAACAACGGTTGAGGACATGGATGTTGCAGTCCGTGCCCATCTTTGTGGCTGGAAGTTCATATATCTAAATGATGTAAAGTGCCTTTGTGAACTTCCAGAATCATATGAAGCGTACAAGAAACAACAACACCGCTGGCATTCAGGCCCAATGCAGTTATTTCGTTTGTGCTTCTCTGATATACTCAAATCAAAGGTTTGGAACTTATTTGCTGTTAATTTTGCATGCAGAGTACTTTCTGTCCTTCAAGATTTTATATGA 1104 42.21 MGRIGPLWRALLVGDWRVWAFVSGPVNTVLGGLGMKDWLLTILGFTGGWLVACGRGFWGFGFHDQRGFGYPGSPPHSGKDRKSEAFGNVEKGFILLVYSLLVPLSVLKVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQVNGLFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDVAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVWNLFAVNFACRVLSVLQDFI 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39597228 39603418 - Maker00014500 Lcy3g1330 628522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1330 367 Pfam Glycosyl transferase family group 2 189 359 IPR001173 -
Lcy3g1330 367 FunFam Glycosyltransferase-like protein, family 2 95 314 - -
Lcy3g1330 367 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 99 313 IPR029044 -
Lcy3g1330 367 SUPERFAMILY Nucleotide-diphospho-sugar transferases 112 352 IPR029044 -
Lcy3g1330 367 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 108 349 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1330 Lcy-Chr3:39597228 Lcy9g1762 Lcy-Chr9:42822519 6.99E-142 dispersed
Lcy3g1330 Lcy-Chr3:39597228 Lcy13g2156 Lcy-Chr13:40481904 9.54E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1330 - - - 0.0