Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1338 ATGAACGATGTGAAAGATCATAATCAAGAGGAAATTCCAGTATTGGACTTTGAGAGATTGGAAGTGGTAACGGCGCTCGGCCGAGGAGCCAAAGGAGTGGTGTTTTTGGCACGGAATGCAGACGAAAGAGAAGGCGAATGGCTGGCCTTGAAGGTAATTTCCAGAGAATTGATCGAGAGGAAGGCCAAGATCGTCAATACCGAGGGAGATGAGTACCGAAGAGTTTGCTTTGAACGAGAAGTCTTGCGTCACTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGACTTTTGGATACTCGGAAAGTTGTTGGTTACGCCATTGATTATTGCAATGGACGAGATCTTAATACTCTCAGGAAAAAACAGACCGAGAAAATGTTCTCCGATGACGTCATCAGGTTTTACGCTGCGGAATTAGTTATGGCGTTAGAGTATGTACACAGTTTAGGAATAGTTTACAGAGATTTAAAGCCGGAGAATGTTATGGTTCAACAGAACGGCCATGTAATGCTCGTCGATTTTGATCTCTCTACAAGACTCCCTCCAAAATCTCCTAAATCGTCACCGTCGCCGAAGATTTTGACGGAATCCGAATCGGCGATGATGAAGAATGAAAAGAGGAAGAAGAAGAAAAGATTCTTTCATTTTAACCGATTCTGCAACTCCGGCGTTTCACCGGAGGATTCCGACCAACAGACAGCGGCGGAGAAGCCAAGATCGCCGCCTGCGTCGTCGTCGTCAGAATCAGACTCGTCCGAGAAGTCGAACTCATTCGTCGGAACGGAGGAGTACGTGGCGCCGGAGATCATCGCCGGGAAGGGCCATGACTTCGCCGTGGACTGGTGGTCCCTCGGCGTCGTTCTGTACGAGATGCTGTACGGAACGACGCCGTTTAGGGGATCGAATCGGAAGGAAACGTTTTACCGGATTCTGACGAAGTCCCCGGATCTATGCGGCGAGGCGACGCCGTTGAGAGATTTGATAAAGAAGTTGCTAGAGAAAGATCCGACGAAGAGGATCGAACTGGAGGAAATCAAGGGCCACGAATTCTTCAAAGGAACCGATTGGGATTTGGTTTTGGAAATTCCCCGGCCGCCGTCGCTACCAGAAATAGCGGCGGAGGACATAGATGGAAATAAGTTAATTAACGTGGAGTGTTTTGTGGAAGACGTATTTTGCAGCGAAGCGGAGAAGAAGAATTGTATGAACGGCGATGAAGGAAAAGGGATTATTACTAATTACACGGAGTCTGACAGATTTCATGTATTCTGA 1272 47.88 MNDVKDHNQEEIPVLDFERLEVVTALGRGAKGVVFLARNADEREGEWLALKVISRELIERKAKIVNTEGDEYRRVCFEREVLRHFRHPLLPRLRGLLDTRKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQQNGHVMLVDFDLSTRLPPKSPKSSPSPKILTESESAMMKNEKRKKKKRFFHFNRFCNSGVSPEDSDQQTAAEKPRSPPASSSSESDSSEKSNSFVGTEEYVAPEIIAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKSPDLCGEATPLRDLIKKLLEKDPTKRIELEEIKGHEFFKGTDWDLVLEIPRPPSLPEIAAEDIDGNKLINVECFVEDVFCSEAEKKNCMNGDEGKGIITNYTESDRFHVF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39775917 39777672 + Maker00015099 Lcy3g1338 628530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1338 423 MobiDBLite consensus disorder prediction 180 201 - -
Lcy3g1338 423 PANTHER FLIPPASE KINASE 1-RELATED 10 374 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy3g1338 423 Pfam Protein kinase domain 21 185 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1338 423 Pfam Protein kinase domain 247 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1338 423 MobiDBLite consensus disorder prediction 223 258 - -
Lcy3g1338 423 SMART serkin_6 20 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1338 423 SUPERFAMILY Protein kinase-like (PK-like) 18 373 IPR011009 -
Lcy3g1338 423 FunFam Serine/threonine-protein kinase OXI1 253 370 - -
Lcy3g1338 423 FunFam Serine/threonine-protein kinase OXI1 114 182 - -
Lcy3g1338 423 Gene3D Transferase(Phosphotransferase) domain 1 114 182 - -
Lcy3g1338 423 Gene3D Transferase(Phosphotransferase) domain 1 246 370 - -
Lcy3g1338 423 Gene3D Phosphorylase Kinase; domain 1 20 113 - -
Lcy3g1338 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1338 423 ProSiteProfiles Protein kinase domain profile. 20 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1338 Lcy-Chr3:39775917 Lcy8g2106 Lcy-Chr8:47250171 1.06E-88 dispersed
Lcy3g1338 Lcy-Chr3:39775917 Lcy1g2134 Lcy-Chr1:29645105 3.81E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65786 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1338 K20714 - csv:101223223 623.239