Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1356 ATGGCAAACACTAAAGTTCCATCCAAGAGAAACAATGAGCTTCTCATCTTAGCTCTCTTAGCTACTTTACTCACTAATGCCATCTTTGTTAGAGCCAATTCTGATGACAATGTGGGTGTTGTAGAGCACTCATGTGCCTCCACTCTTTATCCTCAACTATGTCATTCTACAATATCCTCCGTCGTAGGAACATCCAACATTTTGAGTGTGAAAGATATAGTCGAAGTCTCGTTGAGTGTTGCTATCGATGCAGCTACGCATAACCACAAGTTCGTCAAGAGACTTTCGATGTCGCTCAATGATGTTACCAAACAAGGGAGAATTGCTCTCCATGATTGTATCGAGACCACCGACAAGACGCTCGATGACCTTTACAAGGTCGTAGAGGATCTTCGTGAGTACCCGAAAAAGAAATCTCTTACCCTATATGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACCAACCAGGAGACTTGTTTGGAGGGTTTATTATCGCACGAGAAAGCTGACACAAGAGCGTTGAAGTTCATTGAAGAGACACATACTCACGTCACAAAGTTGTGTAGTAATGCATTGGCATTGGTGAAGAAGCTGACTGACACTGATATAACAAATCAGAAAAAGTTGGTGATCCCTTTCCCTAAGAAAATGGGTTCATCCATTCTACGACTCTTTTCCGACATTACCAACGAGGAAAAAGGTGAGAATAGGGGAAGGGAGGATTTAGAAGATGGAATCAAGTGGCCAGAATGGATGGCAATTAGCGACCAGAAGCTTTTGGAGTCATCAACGATGGAAGCGGCGGCGGACGTGGTGGTGGCGGCCGACGGAAGTGGAAATTATCGAACAGTGTCGGAGGCAGTGGCGGCGGCGCCGAGTAAGAACAGCAAAAGATATGTAATAAGAATCAAGGCTGGAGTTTACAAGGAAAATGTTGAAGTCCCAAGCAGTAAGAAGAATATTATGTTATGGGGAGATGGAAGATCCAAAAGCATTATCACTGGTGACAGAAGTGTTGGGGGTGGCAGCACAACCTTCAGATCCGCCACAGTCGGTAAGGACATGTTTGAGAGTGATTTTGAAATTGCTAAAATTCATTTTTCTGCTGTGGGAGATGGATTCTTAGCTCGAGACATAACCTTCGAAAACACAGCCGGACCAGCCAACCACCAAGCCGTAGCGCTCCGCGTTGGTTCAGATCAGTCAGCCTTCTACCGTTGCGGCATTCTAGCCTACCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTTCGTCAACTGTGTCGTCGCGGGCACAGTCGACTTCATTTTCGGAAACGCGGCAGTCGTGATCCAAAACTCGGTCCTCACCCCGCGCCGACCAGGCCCTAAACAACAGAACATGGTCACGGCACAAGCAAGAACCGATCCGAACCAAAACACGGGAATCGTGATCCAAAAGTGCATGATCAAAGCGACTGCGGACTTGGAGCCAGTGATAAATCAGTTCCCAAGCTTCCTTGGGCGGCCGTGGAAGGAATATGCTAGGGTTGTGGTGATGCAGACGGATATAACCAATGTGATAGATCCAAAGGGATGGGCGCCATGGGACAAGGATTTTGCTCTTAAGACACTCTTCTTTGCTGAGTATGACAACAATGGAGCTGGAGCCAATACTTGTTGTCGGGTGTCGTGGTCCTCCATTATTAATGCAGATCAAGCTAAGGCTTTTACTGCTGGACCATTCATTGGTGGTGCCGATTGGCTTCCCCCCACTGGCTTCCCCTATCAACTTGGCCTCTAA 1791 46.96 MANTKVPSKRNNELLILALLATLLTNAIFVRANSDDNVGVVEHSCASTLYPQLCHSTISSVVGTSNILSVKDIVEVSLSVAIDAATHNHKFVKRLSMSLNDVTKQGRIALHDCIETTDKTLDDLYKVVEDLREYPKKKSLTLYADDLKTFLSSAITNQETCLEGLLSHEKADTRALKFIEETHTHVTKLCSNALALVKKLTDTDITNQKKLVIPFPKKMGSSILRLFSDITNEEKGENRGREDLEDGIKWPEWMAISDQKLLESSTMEAAADVVVAADGSGNYRTVSEAVAAAPSKNSKRYVIRIKAGVYKENVEVPSSKKNIMLWGDGRSKSIITGDRSVGGGSTTFRSATVGKDMFESDFEIAKIHFSAVGDGFLARDITFENTAGPANHQAVALRVGSDQSAFYRCGILAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVIQNSVLTPRRPGPKQQNMVTAQARTDPNQNTGIVIQKCMIKATADLEPVINQFPSFLGRPWKEYARVVVMQTDITNVIDPKGWAPWDKDFALKTLFFAEYDNNGAGANTCCRVSWSSIINADQAKAFTAGPFIGGADWLPPTGFPYQLGL 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40010269 40017957 - Maker00013962 Lcy3g1356 628548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1356 596 Pfam Pectinesterase 272 581 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy3g1356 596 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857(InterPro)
Lcy3g1356 596 ProSitePatterns Pectinesterase signature 2. 432 441 IPR033131 -
Lcy3g1356 596 FunFam Pectinesterase 38 201 - -
Lcy3g1356 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Lcy3g1356 596 PANTHER PECTINESTERASE 19 587 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy3g1356 596 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Lcy3g1356 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 202 IPR035513 -
Lcy3g1356 596 CDD PMEI-like_3 44 201 - -
Lcy3g1356 596 SMART PMEI_2 36 196 IPR006501 GO:0004857(InterPro)
Lcy3g1356 596 NCBIfam pectinesterase inhibitor domain 17 201 IPR006501 GO:0004857(InterPro)
Lcy3g1356 596 SUPERFAMILY Pectin lyase-like 267 595 IPR011050 -
Lcy3g1356 596 Gene3D - 266 596 IPR012334 -
Lcy3g1356 596 FunFam Pectinesterase 266 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1356 Lcy-Chr3:40010269 Lcy3g2282 Lcy-Chr3:49654900 2.49E-215 dispersed
Lcy3g1356 Lcy-Chr3:40010269 Lcy5g2560 Lcy-Chr5:48299494 4.16E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1356 K01051 - csv:101221055 771.541