Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1380 ATGGACCTGCAGCTCTTGTGGGTTGGCTTCTTTTTGTGCTGTGGATTTTGGGTTCTTGCTTTAACTGATCAAGATGGTTTTCTAAGCTTATCTTGTGGAGCAACTACCACCTTCACTGACTCCTCCAACATCTCATGGATTCCGGACATCGACTACATCGGCTCCGGTAACACATCGATTATCGACAATGGCGAGGGCGAATCCTTTTCCAATGGCCATGTTCGGTTCTTCCCCGACCCCCGTGCGCGAAAATGTTACAAGCTGCCACTGAAAAATGGCTCCTCATCAGTCCTCATCAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGGAAGCCCCCTGCATTCTCTGTTTCTGTTGGTACAGCCATAACTAGCAATGTGAACCTCACTTCTCATGACCCTTGGACAGAGGAGTTTGTATGGCCAGTTAACAAGGACACTGTCTCTTTCTGTTTGCATTCCATTCCTCACGGCGGCAGCCCTCTCATTTCTTCGCTCGAACTCCGACCGCTGCCGCACGGAGCGTACCACGATGGCTTGCTTCCAAGTCAGGCTCTTAGAAAGTCCTATCGAATCAATTGTGGTTACACTAACGGATCCCTCAGGTACCCGATCGATCAATACGATCGAATCTGGGACACGGATAGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCCAACTTTGATTCTATAGATCATGTGAAGGAAGCTCCACCAGCTGTAGTGGTTGAAACAGCTAGAGTTTTGGCAAGAAGAGATGAGCTGAGCTACAACCTCCCACTTGAAGAACAAGGAGATTACTTTTTGATTTTGTATTTTGGTGGAATTCTTGCTGTTCATCCTTCATTTGATGTGTTGATCAATGGGAAAGTTGTAGAATCAAACTACACTGTGGAAATGGGAGAGATGAGGGCTTTGTATGTCATTCAAGAGCAAATCAAGAGCTTGAATATCACTCTCAAGAGTGTTAAATTCTACCCTCAAGTCAATGCCCTTGAGGTCTATCAGATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAAGTGATTCACCAATCTAGTGGTTTGAATTTGGGATGGGAAGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTGAACTTGAGTTTCAACAAGCTAACATCATTTGGGACAGATTTGGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCATCTATTGAATTTGGAGAACAATAGGCTGGAAGGAACCCTCCCATTGTCTTTAAACAAAGGAAGCCTGGAAATTAGAACATCAGGAAACCTTTGCCTGTCTTTCTCCACAATGACATGCAATGATGTTTCATCAAATCCAGCCATTGAAACACCACAAGTCACAGTGGTTCCTGAGAAGAAGAAGGAGATGAGCAGCAGCCACAAGGATTATAACAAAAATCATATGCCAATTACAATCATTGTTTGTGCAGTTGCAGCAGCTTTGCTGGTTCTCATCACTCTCTCCCTTTCACTTCTACTCTACGTGAGAAAACATTCATCTCAACACACAACTCAACTCACATACTCAACAAAGGCAGCAATGGAGCTTAGGAATTGGAACTCTGCAAAAGTTTTCTCGTACAAGGAGATCAAGGCAGCAACAAACAACTTCAAGGAGGTGATTGGGCGAGGAAGCTTTGGATCTGTCTATCTTGGAAAGCTTCCTGATGGAAAACTTGTGGCTGTCAAAGTGAGGTTTGACAAAAGCCAACTTGGGGCTGATTCCTTTATCAATGAGGTTCATCTCTTGTCTCAAATTCGTCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTATGAATATTTACCTGGTGGATCCTTGGCTGACCACATCTATGGCATGAACAAGAAAAGTGTTTCACTTAGCTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGCGAACCAAGAATAATCCACCGTGATGTGAAGTGTAGTAATATCCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTCTCCAAGCAAATAGCACACCCTGATGCAACTCATGTCACAACCGTTGTCAAGGGCACTGCTGGTTATTTGGATCCTGAATATTACTCCACTCAACAGTTGACCGAAAAAAGTGATGTCTATAGTTTTGGAGTTGTTCTATTGGAGCTTATTTGTGGACGAGAGCCTTTGAGTCGCACTGGAACTCCAGATTCTTTCAATTTGGTGTTATGGGCAAAACCCTACTTGCAAGCAGGTGCATTTGAGATAGTAGATGAAAGTTTGAGTGGAAGCTTTGCTGTTGAAAGCATGAAGAAGGCAGCTTTTATTGCTATAAGATGTGTAGAGAGAGATGCTTCTCTAAGGCCTAATATAGGACAAGTTTTGGCTGACCTCAAAGAAGCTTATGATGCACAAATTGCATATCTTTCTACTTTTGACCATTGA 2610 42.91 MDLQLLWVGFFLCCGFWVLALTDQDGFLSLSCGATTTFTDSSNISWIPDIDYIGSGNTSIIDNGEGESFSNGHVRFFPDPRARKCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPAFSVSVGTAITSNVNLTSHDPWTEEFVWPVNKDTVSFCLHSIPHGGSPLISSLELRPLPHGAYHDGLLPSQALRKSYRINCGYTNGSLRYPIDQYDRIWDTDSNFKPFHVSSGFKVEANFDSIDHVKEAPPAVVVETARVLARRDELSYNLPLEEQGDYFLILYFGGILAVHPSFDVLINGKVVESNYTVEMGEMRALYVIQEQIKSLNITLKSVKFYPQVNALEVYQIVHVPLEASSTTVSALQVIHQSSGLNLGWEDDPCSPRTWDHVGCEGNLVTSLNLSFNKLTSFGTDLENLSNLKILDLQNNSLQGIVPDSLGELEDLHLLNLENNRLEGTLPLSLNKGSLEIRTSGNLCLSFSTMTCNDVSSNPAIETPQVTVVPEKKKEMSSSHKDYNKNHMPITIIVCAVAAALLVLITLSLSLLLYVRKHSSQHTTQLTYSTKAAMELRNWNSAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKSQLGADSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGMNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQIAHPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSRTGTPDSFNLVLWAKPYLQAGAFEIVDESLSGSFAVESMKKAAFIAIRCVERDASLRPNIGQVLADLKEAYDAQIAYLSTFDH 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40314744 40324264 - Maker00013900 Lcy3g1380 628572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1380 869 Gene3D - 189 345 - -
Lcy3g1380 869 Pfam Malectin-like domain 30 344 IPR024788 -
Lcy3g1380 869 Gene3D Ribonuclease Inhibitor 356 475 IPR032675 -
Lcy3g1380 869 CDD STKc_IRAK 588 855 - -
Lcy3g1380 869 Gene3D Transferase(Phosphotransferase) domain 1 658 865 - -
Lcy3g1380 869 FunFam serine/threonine-protein kinase PBS1-like 550 657 - -
Lcy3g1380 869 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524(InterPro)
Lcy3g1380 869 Pfam Protein kinase domain 584 851 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1380 869 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 658 864 - -
Lcy3g1380 869 Gene3D Phosphorylase Kinase; domain 1 543 657 - -
Lcy3g1380 869 PANTHER OS07G0107800 PROTEIN-RELATED 25 856 - -
Lcy3g1380 869 SUPERFAMILY L domain-like 358 458 - -
Lcy3g1380 869 SMART serkin_6 582 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1380 869 SUPERFAMILY Protein kinase-like (PK-like) 565 853 IPR011009 -
Lcy3g1380 869 FunFam Leucine-rich repeat receptor-like kinase 352 475 - -
Lcy3g1380 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1380 869 Pfam Leucine rich repeat 392 449 IPR001611 GO:0005515(InterPro)
Lcy3g1380 869 ProSiteProfiles Protein kinase domain profile. 582 864 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1380 Lcy-Chr3:40314744 Lcy5g0257 Lcy-Chr5:2426376 2.77E-121 dispersed
Lcy3g1380 Lcy-Chr3:40314744 Lcy3g1389 Lcy-Chr3:40425629 6.39E-70 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65787 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1380 - - - 0.0