Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1389 ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAGCGAAAAGAACAAAGAGTAGTAGAAGAGAACAATCTGTGTCGTTGCATTCTCGCAGTCTTAAACAACAACCGCAGCAGCAACAACATCAACCTGCTCCTGCTCCGGCTCCTCCTCCTCCACGCCCTACGCCAACGGAAAATCCAAAAGTAAACCAGGTGCAGAAGGATGTAGAGAAAGAGAAAGAGATTATTGGGGAAAATAATAACATTGCAGCGCAGACCTTCACATTCAGAGAGCTGGCCACTGCCACAAAGAATTTCCGTCAAGAGTGTCTCATTGGAGAGGGAGGGTTTGGGAGAGTTTACAAAGGCAAACTTGACAAAACTAACCAGGTGGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAATAGAGAGTTTCTTGTGGAGGTTTTGATGCTCAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTCTTGGTCTATGAGTATATGCCTTTGGGATCTCTAGAAGATCATCTACTTGACATTCTACCAGGGAGAAAGGCATTGGATTGGGCAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAGTACTTACACGACAAAGCAAATCCACCGGTGATATACAGAGATTTGAAAGCATCAAACATTCTATTGGACGTTGATTTCAATGCAAAACTGTCGGATTTTGGGCTGGCAAAGCTTGGACCTGTTGGGGACAAGTCTCATGTTTCCTCCAGGGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGGACTGGCCAACTCACTCTCAAATCTGATGTCTACAGCTTTGGCGTTGTCTTGTTGGAGCTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGCTAAACAGCAAAACTTGGTCGCTTGGGCATATCCAATATTCAAGGAACCAAATAGATTCATGGAGTTGGCAGATCCTCTTCTAGCTGGAGACTTTCCTGTTAGAGCTCTGAACCAAGCAGTCGCGGTCGCCGCTATGTGCCTCCACGAGGAAGCATCGGCCCGGCCGTTGATGAGTGACGTCGTTACTGCTCTTAGCTTCTTGGGTGCAAAAGCCACACATTCATTGTCGTCATCGTCGTCATCATCAGATGATCTCCCTCCACCACTATTTGATCAAAATCCGATCAATTCAGCAAAATCCAATGAAGACGAAATGGCTGAGGCACGCCAGCGAGCGGTCGCCGAAGCCATCGAATGGGGTTGCTCCTCCAAGCAAAATGCAGCTGCTTCCCGCCCGGGAAGTAGTTCTTCCTTGTAA 1347 46.84 MSCFPCFSSHGKAAKRTKSSRREQSVSLHSRSLKQQPQQQQHQPAPAPAPPPPRPTPTENPKVNQVQKDVEKEKEIIGENNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDILPGRKALDWATRMKVGLGAAKGLEYLHDKANPPVIYRDLKASNILLDVDFNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVAWAYPIFKEPNRFMELADPLLAGDFPVRALNQAVAVAAMCLHEEASARPLMSDVVTALSFLGAKATHSLSSSSSSSDDLPPPLFDQNPINSAKSNEDEMAEARQRAVAEAIEWGCSSKQNAAASRPGSSSSL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40425629 40430528 - Maker00014484 Lcy3g1389 628581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1389 448 Pfam Protein kinase domain 102 371 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1389 448 ProSiteProfiles Protein kinase domain profile. 100 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1389 448 Gene3D Transferase(Phosphotransferase) domain 1 177 394 - -
Lcy3g1389 448 FunFam Serine/threonine-protein kinase PBS1 70 176 - -
Lcy3g1389 448 SUPERFAMILY Protein kinase-like (PK-like) 86 387 IPR011009 -
Lcy3g1389 448 MobiDBLite consensus disorder prediction 1 68 - -
Lcy3g1389 448 MobiDBLite consensus disorder prediction 387 410 - -
Lcy3g1389 448 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524(InterPro)
Lcy3g1389 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1389 448 Gene3D Phosphorylase Kinase; domain 1 68 176 - -
Lcy3g1389 448 MobiDBLite consensus disorder prediction 43 59 - -
Lcy3g1389 448 FunFam Serine/threonine-protein kinase PBS1 177 392 - -
Lcy3g1389 448 CDD STKc_IRAK 106 374 - -
Lcy3g1389 448 PANTHER OS07G0668900 PROTEIN 40 390 - -
Lcy3g1389 448 SMART serkin_6 100 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1389 448 MobiDBLite consensus disorder prediction 387 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1571 Lcy-Chr2:21454477 Lcy3g1389 Lcy-Chr3:40425629 1.36E-146 dispersed
Lcy3g1389 Lcy-Chr3:40425629 Lcy3g1489 Lcy-Chr3:41721369 6.14E-164 dispersed
Lcy3g1380 Lcy-Chr3:40314744 Lcy3g1389 Lcy-Chr3:40425629 6.39E-70 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65788 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1389 - - - 0.0