Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1403 ATGGCGATTCTGAAGCTTTTAGCTCTCTGCATTTCCTTCTTCTTATTGATCAGAGCCCCTGTACGAGGTGATTCCTTACATTTACCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTTCTTCTGATGTTCAGCTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGTGACTCTCAAAACTTGCTTTTGTCTTCATGGAATTACTCTTTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAGTGGGACTCCTCTGGTTTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTGTTCAAAGACCCTTCTCTTCATGTTCTCTCTCTGCAACTTCCTTCTGCTAATCTCACTGGTTCGTTGCCTAAAGAGCTTGGTGAGTTCACTATGCTCCAAAGCCTCTATCTAAGCATAAACTCTTTGAGTGGAAACATTCCACTTGAGCTTGGTTACAGTTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTGTTGACTGGAGCTCTTCCGCCATCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGACTTCATGGAAATTCATTATCTGGGTCGCTGCCGGAGCCGGCTTTACCAAACTCCACTTGCAAGAATTTGCAGGCTTTGGATTTGGGCAACAACCAGATTTCAGGTACTTTTCCAGAATTCATTACTAGATTTCAGGGTCTGAAAGAGCTTGATCTTGGGAAAAATTTGTTGTCTGGGCAAATCCCTCAGAGCTTAGGCCAGTTGGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCCCTTTTTGGTAACTCAAAGTTTGGTGTGGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTCTGAAAAGCTGTGCAGGACCTTCCCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATCGGCTTGATGACTGGGACGGTGGTTTTAGCTTCATTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGAGTAGGAGTGAGAGTGAAGATGAGATTGAGGAAGGAGAAGATGAAGAAAACGGCGGCACTATCGGCACTGGTGGTGAAGGAAAACTCATTTTGTTTCAGGGTGGTGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACAAGCTATGGCACAATATATAAGGCAAAGCTTGCCGATGGAGGTACCATTGCCCTGAGACTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGTGATTAAACAGTTGGGAAAGATTCGCCATGAGAACTTGATTCCTTTGAGAGCTTTCTATCAGGGAAAGAGAGGAGAGAAGCTCCTCATTTATGACTATCTGCCAATCAGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTCGAAGGCACAAGATTGCATTAGGCATTGCCCGGGGACTCGCCCATCTTCACACAGGTCTTGAGGTTCCCATAACACATGGTAATGTGAGATCAAAAAACGTGCTTGTCGACGACTTCTTTGCAGCGAGACTGACCGAGTTCGGGCTCGACAAGCTAATGATCCCATCAGTAGCCGACGAAATCGTTTCGCTCGCAAAGTCGGACGGGTACAAGGCACCAGAGCTCCAAAGGATGAAGAAATGCAATTCCAGAACAGATGTGTATGCATTTGGAATCTTGCTGCTGGAAATTCTGATTGGGAAGAAGCCAGGGAAGGGTGGAAGAAGTGGAGAGTTTGTGGATCTGCCATCATTGGTGAAAGTGGCAGTTTTGGAGGAGACAACAATGGAGGTTTTTGATGTGGAGGTTTTGAAAGGGATCAGAAGTCCCATGGAAGATGGAGTGGTTCAGGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCAGTGAGACCCTCCATGGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGTCCAACAGAAACAAGAAGTGAAATTGGTACTCCATTTTGA 2055 44.82 MAILKLLALCISFFLLIRAPVRGDSLHLPSSSSSSSSSFSSDVQLLLGKIRASLEGDSQNLLLSSWNYSLPLCQWRGLKWVFSSGTPLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKELGEFTMLQSLYLSINSLSGNIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCDKLVSVRLHGNSLSGSLPEPALPNSTCKNLQALDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGQIPQSLGQLELEKLNLSNNNFSGILPLFGNSKFGVEAFEGNSPGLCGEPLKSCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKSRSESEDEIEEGEDEENGGTIGTGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKGGRSGEFVDLPSLVKVAVLEETTMEVFDVEVLKGIRSPMEDGVVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40628038 40631390 - Maker00014082 Lcy3g1403 628595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1403 684 Gene3D Ribonuclease Inhibitor 204 302 IPR032675 -
Lcy3g1403 684 Gene3D Phosphorylase Kinase; domain 1 369 460 - -
Lcy3g1403 684 SUPERFAMILY L domain-like 56 274 - -
Lcy3g1403 684 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515(InterPro)
Lcy3g1403 684 FunFam Leucine-rich repeat receptor-like protein kinase 208 300 - -
Lcy3g1403 684 MobiDBLite consensus disorder prediction 664 684 - -
Lcy3g1403 684 ProSiteProfiles Protein kinase domain profile. 384 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1403 684 MobiDBLite consensus disorder prediction 339 362 - -
Lcy3g1403 684 MobiDBLite consensus disorder prediction 665 684 - -
Lcy3g1403 684 Pfam Protein tyrosine and serine/threonine kinase 388 659 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1403 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 113 666 IPR052451 -
Lcy3g1403 684 Pfam Leucine rich repeat 210 268 IPR001611 GO:0005515(InterPro)
Lcy3g1403 684 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 103 198 - -
Lcy3g1403 684 SUPERFAMILY Protein kinase-like (PK-like) 389 660 IPR011009 -
Lcy3g1403 684 Gene3D Transferase(Phosphotransferase) domain 1 462 677 - -
Lcy3g1403 684 ProSiteProfiles Leucine-rich repeat profile. 257 278 IPR001611 GO:0005515(InterPro)
Lcy3g1403 684 Gene3D Ribonuclease Inhibitor 41 203 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1403 Lcy-Chr3:40628038 Lcy7g1037 Lcy-Chr7:11061369 2.85E-73 dispersed
Lcy3g1403 Lcy-Chr3:40628038 Lcy5g0069 Lcy-Chr5:797078 2.95E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65789 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1403 - - - 0.0