Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1429 | ATGGCTTCTACTACCGGTCTTGTAGTTGGATCTCTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGTGAAGTTTTAGAAATTCGTGGCGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGTAGTTAAAGCTGCTAATGTCTATCCCAAAGATTCCGAAGTGCCACCTTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCATGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTGAACCCTTTTACAAGGTTACCTCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCCGCATTCGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATGCTGCCTACAGGCATTTTTCCACAATATTGTTACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACAAAGTTGCTTATGCGTTATCTTGCATATATGGGAGGGAGAGCTGCTGCTGAGGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAGGCATTTGGGAATGCCAAGACTGTTAGGAACAACAACTCAAGTCGATTTGGTAAGTTTGTGGAGATCCAATTTGACCAAAGCGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCTGATCCAGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAACTTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGGAATTGATGATGCCAAGGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGAATAAGTTCGGATGAGCAGGATGGAATATTTCGTGTTGTGGCCGCAATCCTTCATCTCGGAAACATTGAATTTGCAAAAGGGAAGGAGGCCGATTCTTCTGTTCCCAAAGACGAAAAATCTTGGTTCCATCTTAGAACTGCTGCCGAGCTTTTCATGTGTGATGAAAAGGCCCTGGAAGATTCTCTTTGCAAACGTGTGATCGTCACTCGTGACGAAACCATCACGAAGTGGCTAGATCCAAATTCTGCAGCTCTTAGCAGAGATGCTCTGGCAAAAATTGTGTACTCAAGGCTGTTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGCCAGGACCCTGATTCAAAGTTCTTGATTGGAGTGCTAGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTACACAAAAGAGGAAATTGATTGGAGTTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCACGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAATCATAAACGCTTCAGCAAACCGAAATTAGCTCGGAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTGGACAAAAATAAAGACTATGTTGTTGCTGAACATCAAGCGCTCTTGAGTGCTTCCAAATGCTCCTTTGTGTCGTGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCAAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTACAATTGGTATCACTGCTGGAAACTCTAAGTGCTACTGAGCCCCATTATATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTGCTATCTTTGAGAATAAAAATATATTGCAACAACTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTAAAGGATACCAGATTGGTAAGACAAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTTGATGCGCTCAGGACTGAGATCTTAGGGAGATCAGCAAGTATTATTCAGCGGAAAGTTCGATCTTATTTGGCACGTAGAAGTTTTGTATTGCTTCGGAGGTCAGCTATACATCTACAATCTGCATGTAGAGGACAACTTGCTCGACAAGTATTTGAGGGCATGAGGAGGGAAGCTTCTTCTATAATGATTCAAAGGAATCTGCGCATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTACGCTTCAGAAGGCGCACTAAAGCAGCAATTATTATCCAGAGCTACTGTCGCAGATATTTGGCTCAGTTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAGTTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACATGGAGACTGCAGCTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAACTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGGTTCAGTTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAGGCTGCAGATATTATTCCAATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAATGATTGAGAAAATTTCCAGTGAAAATGAAAAGCTCAAGGCGTTGGTAAGTTCACTGGAAAAGAAGATCGATGAAACAGAGAAAAAATATGAAGAGGCGAACAGAGTTAGTGAAGAAAGGTTGAAGCAAGCATCAGAGGCAGAAACAAAAATTATTCAATTAAAGACTGCAATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAATCAGATTCTTCGGCAGCAGACCTTCCTGAAAACACCGGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGCAGCAGAGAAATTGGAGAATGGTAACCATTTGACTGAAGATAATAACAGAATCGAGGAGCAGTTTGTAACACCCGTGAAAACACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCGCATTTTGAACACCAACAAGAGAATGTTGATGCTCTTGTCAGTTGTGTCATGAATAACGTTGGGTTTAGTAATGGGAAGCCTGTAGCTGCATTTACCATTTATAAATGCCTCCTTCACTGGAAATCTTTTGAAGCCGAAAAAACAAGTGTATTTGATCGTCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCAAACACATCTGCGCTACTATTCTTGCTTCAACGAAGCTTGAAAGCTGCTGGTGCTCCCCGAAAACCGCCAACTTCAACATCCATATTTGGAAGAATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAGCAATCTTGGATCTGCACTTAAGGTAGTACGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGTTGACAGCATATGTCGAAAAAATATTTGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTTTCCTTGTGTATCCAAGCACCAAGAACATCAAAAGGAGTATTACGATCCGGAAGATCGTTTGGGAAAGATACTCATACAAATTACTGGCAAAGCATCATAGAAAGCCTTAACATGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCACAAATACTTATCCAGAATATCTTCGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTCCTTCGTCGAGAATGTTGTACATTCAGCAATGGCGAATATGTAAAATCTGGGTTAGCCGAGTTGGAGCTCTGGTGTTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTCAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGACGATAACTATAACACTCGAAGCGTATCGCCAGATGTAATATCCAGTATGAGAGTGCTCATGACTGAGGACTCCAACAATGCAGTCAGCAGTTCCTTCCTATTGGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTCTCAAACTCGCTGCAAGAGAAAGATTTCTCTGGCGTAAAGCCTGCCGACGAACTACTTGAGAACCCAGCCTTCCAATTTTTACACGAGTGA | 4551 | 40.96 | MASTTGLVVGSLVWLEDSEEAWIEGEVLEIRGEEIKVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTRLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRHFSTILLLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRTFHYLNQSNCYELDGIDDAKEYIATRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSAIHLQSACRGQLARQVFEGMRREASSIMIQRNLRMHLCRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRTKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEETKTQENEKLQSALQDMQVQLKETKAMFEKEREAAKKAADIIPIVKEVPVLDNAMIEKISSENEKLKALVSSLEKKIDETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEEKFSNIESENQILRQQTFLKTPVKKMADHLPIAAAEKLENGNHLTEDNNRIEEQFVTPVKTLKRISSESEIKLSRSHFEHQQENVDALVSCVMNNVGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPTSTSIFGRMTMGFRSSPSSSNLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQAPRTSKGVLRSGRSFGKDTHTNYWQSIIESLNMLLCTLKENFVPQILIQNIFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE | 1516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 41012173 | 41032301 | - | Maker00014444 | Lcy3g1429 | 628621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1429 | 1516 | FunFam | Myosin 2 | 319 | 431 | - | - | |
| Lcy3g1429 | 1516 | ProSiteProfiles | IQ motif profile. | 765 | 794 | - | - | |
| Lcy3g1429 | 1516 | Gene3D | - | 674 | 738 | - | - | |
| Lcy3g1429 | 1516 | CDD | MyosinXI_CBD | 1118 | 1485 | IPR037975 | GO:0007015(InterPro) | |
| Lcy3g1429 | 1516 | ProSiteProfiles | IQ motif profile. | 838 | 867 | - | - | |
| Lcy3g1429 | 1516 | FunFam | unconventional myosin-Va | 841 | 888 | - | - | |
| Lcy3g1429 | 1516 | ProSiteProfiles | Myosin motor domain profile. | 62 | 739 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | Pfam | Myosin head (motor domain) | 64 | 727 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | ProSiteProfiles | IQ motif profile. | 813 | 842 | - | - | |
| Lcy3g1429 | 1516 | ProSiteProfiles | IQ motif profile. | 744 | 768 | - | - | |
| Lcy3g1429 | 1516 | Coils | Coil | 884 | 957 | - | - | |
| Lcy3g1429 | 1516 | CDD | MYSc_Myo11 | 76 | 727 | IPR036018 | - | |
| Lcy3g1429 | 1516 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | ProSiteProfiles | IQ motif profile. | 790 | 819 | - | - | |
| Lcy3g1429 | 1516 | ProSiteProfiles | IQ motif profile. | 861 | 890 | - | - | |
| Lcy3g1429 | 1516 | Pfam | DIL domain | 1338 | 1442 | IPR002710 | - | |
| Lcy3g1429 | 1516 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 794 | 890 | IPR027417 | - | |
| Lcy3g1429 | 1516 | Gene3D | - | 259 | 317 | - | - | |
| Lcy3g1429 | 1516 | SMART | DIL_2 | 1337 | 1444 | IPR002710 | - | |
| Lcy3g1429 | 1516 | SMART | MYSc_2a | 57 | 740 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | Pfam | IQ calmodulin-binding motif | 744 | 762 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | Pfam | IQ calmodulin-binding motif | 766 | 785 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | Pfam | IQ calmodulin-binding motif | 839 | 859 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | Pfam | IQ calmodulin-binding motif | 863 | 882 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | Pfam | IQ calmodulin-binding motif | 792 | 811 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 35 | 793 | IPR027417 | - | |
| Lcy3g1429 | 1516 | Pfam | Myosin N-terminal SH3-like domain | 9 | 51 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | FunFam | unconventional myosin-Va | 792 | 840 | - | - | |
| Lcy3g1429 | 1516 | FunFam | Myosin XI D | 742 | 791 | - | - | |
| Lcy3g1429 | 1516 | FunFam | Class V myosin | 446 | 591 | - | - | |
| Lcy3g1429 | 1516 | FunFam | Myosin heavy chain | 259 | 314 | - | - | |
| Lcy3g1429 | 1516 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 319 | 608 | - | - | |
| Lcy3g1429 | 1516 | ProSiteProfiles | Dilute domain profile. | 1167 | 1462 | IPR002710 | - | |
| Lcy3g1429 | 1516 | Gene3D | - | 792 | 840 | - | - | |
| Lcy3g1429 | 1516 | Gene3D | - | 742 | 791 | - | - | |
| Lcy3g1429 | 1516 | Gene3D | - | 841 | 889 | - | - | |
| Lcy3g1429 | 1516 | Coils | Coil | 979 | 1055 | - | - | |
| Lcy3g1429 | 1516 | Gene3D | - | 446 | 630 | - | - | |
| Lcy3g1429 | 1516 | Gene3D | Kinesin motor domain | 65 | 669 | IPR036961 | - | |
| Lcy3g1429 | 1516 | PRINTS | Myosin heavy chain signature | 203 | 230 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | PRINTS | Myosin heavy chain signature | 436 | 464 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | PRINTS | Myosin heavy chain signature | 156 | 181 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | PRINTS | Myosin heavy chain signature | 489 | 517 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1429 | 1516 | PANTHER | MYOSIN | 836 | 1461 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy3g1429 | 1516 | SMART | iq_5 | 789 | 811 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | SMART | iq_5 | 741 | 763 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | SMART | iq_5 | 837 | 859 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | SMART | iq_5 | 812 | 834 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | SMART | iq_5 | 860 | 882 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1429 | 1516 | SMART | iq_5 | 764 | 786 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1722 | Lcy-Chr11:41071440 | Lcy3g1429 | Lcy-Chr3:41012173 | 0 | dispersed | |
| Lcy3g1429 | Lcy-Chr3:41012173 | Lcy4g2008 | Lcy-Chr4:46557902 | 0 | dispersed | |
| Lcy3g1429 | Lcy-Chr3:41012173 | Lcy3g1285 | Lcy-Chr3:38810644 | 6.66E-81 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1429 | K10357 | - | csv:101208630 | 2861.63 |