Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1447 ATGGCCGGCTTGGTCACCGGTTCCCAAAATTATCCCCATACTGCCGACGAGAGTCTTCGCGGTCCTCCATCGTCGTCCAAAACATGTCGAGTTTGTGGCGATGAGATAGGACTCAAAGAAGATGGAAAAGTATTCGTGGCGTGTCTTGTGTGCAATTTCCCTGTTTGTCGCCCTTGTTATGAGTACGAAAGGAGCGAAGGCAACAAGTGTTGTCCCCAATGCAACACTCGCTACAAGCGTCACAAAGGCTCTCCAAGAGTCGTTGGTGATGATGAAGAAGCCTATGATGTAGATGATTTTGATGATGAATTTCCTATTAAGCAGCACAACGAAGAATTTGACACAAAACAACCAAATCATGCGGAAAACGATAACTACAACCAGCAGAATTGGCAACAAAATTTGCAGACATCCATCTCAGTTGCAGGCAGTGTGAACGGCAAGGATTTCGAAGGCGAGAAGGAGGGTTACGGAAATGCAGAATGGAAGGAGAGAATCGATAAATGGAAACTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGCAACAACGATCAAGGCGAAGAAGATGAGTACCTAAGCTCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCGAGCAAAATCAGTCCATATCGCATAGTAATAGTCCTCCGCCTCGTGATTCTCGCATTCTTCTTCCGCTTCCGGATCCTAACTCCGGCGTACGACGCGTTTCCCTTATGGCTCATCTCGGTGATCTGCGAGATCTGGTTCGGGTTCTCGTGGATTCTGGACCAGTTCCCAAAGTGGGCGCCGATCAACCGGGAGACGTACCTGGACCGGCTGTCGATGCGGTTCGAGCGGGAGGGGGAGGCGAACCGGCTGGCGCCGATCGACTTCTTCGTGAGTACAGTGGATCCTCTGAAGGAGCCGCCGATCATAACGGCGAACACGGTGCTGTCGATTCTGTCGGTGGACTATCCGGTGGAGAAGGTGAGCTGCTACGTGTCGGACGACGGAGCGTCGATGCTGCTGTTCGACACGCTGGCGGAGACGGCGGAGTTTGCGAGGAGATGGGTGCCGTTCTGCAAGAAGTTCAACGTGGAGCCGAGGGCTCCGGAGTTTTACTTCTCGCAGAAGATGGATTACTTGAAGGACAAGGTGGTGGCGAGCTTCGTGAAGGAGAGGAGGGCGATGAAGAGTTCAAGGTGAGAATCAATGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAGGATGGGACTCCATGGCCGGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGATGTAGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTTGTTCGTGTCTCTGCAGTCCTCACAAATGCGCCATTCATCTTGAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATCGTCACGACAGATACGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGCCCGGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCTCCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGCTGGCCTTCCTGGTGCTGCTGCTGCTGTGGTGGTTCAAGGAAGTCGAAGTCGAAGAAGACAGGGAAAAGAGGTTTGCTTGGAGGCTTGTTCTCAAAGAAGAAGAAAATGATGGGGAAGAGTTATGTGAGGAAAGGGTCTGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTATGATGAATTGGAGAAGTCAACACTCATGTCGCAAAAGAATTTTGAGAAAAGATTCGGGCAGTCACCAGTTTTCATCGCTTCCACCCTTAAGGAAGATGGTGGTCTTCCAGAAGGGACTAACAGCACATCACTAGTTAAAGAAGCCATCCATGTAATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTATGGTTCTGTCACTGAAGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTTTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTCGAGATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTTGAGAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACTTTGACGAACTTAGCTAGTGTCTGGTTCATGGCCCTGTTTATTTCCATCATTGCTACAGCCGTGCTGGAGCTTCGATGGAGTGAAGTGAGTATCGAAGACTTGTGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCGGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGAGTGGACACCAACTTCACAGTTACAGCAAAAGCAGCCGAAGACACCGAGTTTGGAGAGCTCTACCTCTTCAAGTGGACGACCCTCCTCATCCCGCCGACCACTCTCATAATCTTGAACATGGTGGGAGTTGTTGCTGGAATTTCAGATGCAATCAACAATGGCTACGGCTCATGGGGTCCTCTATTTGGAAAGCTGTTTTTCGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGGCAAAACAGGACTCCCACCATTGTTGTCCTCTGGTCCGTGCTTCTTGCATCCATATTTTCACTGGTTTGGGTCAGGATCGATCCCTTCCTGCCCAAGCAAACTGGTCCTGTCCTCAAACAATGTGGAGTGGATTGCTAG 3102 48.45 MAGLVTGSQNYPHTADESLRGPPSSSKTCRVCGDEIGLKEDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVVGDDEEAYDVDDFDDEFPIKQHNEEFDTKQPNHAENDNYNQQNWQQNLQTSISVAGSVNGKDFEGEKEGYGNAEWKERIDKWKLRQEKRGLGNKEDGSNNDQGEEDEYLSSAAAMAETSNIVEQNQSISHSNSPPPRDSRILLPLPDPNSGVRRVSLMAHLGDLRDLVRVLVDSGPVPKVGADQPGDVPGPAVDAVRAGGGGEPAGADRLLREYSGSSEGAADHNGEHGAVDSVGGLSGGEGELLRVGRRSVDAAVRHAGGDGGVCEEMGAVLQEVQRGAEGSGVLLLAEDGLLEGQGGGELREGEEGDEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKTGKRGLLGGLFSKKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSTLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGISDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41225149 41230967 + Maker00014737 Lcy3g1447 628639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1447 1033 CDD mRING-HC-C4C4_CesA 27 77 - -
Lcy3g1447 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 103 IPR013083 -
Lcy3g1447 1033 Pfam Zinc-binding RING-finger 25 93 IPR027934 -
Lcy3g1447 1033 FunFam Cellulose synthase 408 582 - -
Lcy3g1447 1033 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 397 1002 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy3g1447 1033 MobiDBLite consensus disorder prediction 211 233 - -
Lcy3g1447 1033 MobiDBLite consensus disorder prediction 1 27 - -
Lcy3g1447 1033 MobiDBLite consensus disorder prediction 303 324 - -
Lcy3g1447 1033 SUPERFAMILY Nucleotide-diphospho-sugar transferases 452 845 IPR029044 -
Lcy3g1447 1033 Pfam Cellulose synthase 396 1026 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy3g1447 1033 SUPERFAMILY RING/U-box 24 94 - -
Lcy3g1447 1033 FunFam Cellulose synthase 14 103 - -
Lcy3g1447 1033 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 401 583 IPR029044 -
Lcy3g1447 1033 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1447 Lcy-Chr3:41225149 Lcy3g1908 Lcy-Chr3:46316711 0 dispersed
Lcy3g1447 Lcy-Chr3:41225149 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1447 K10999 - csv:101205733 1202.96