Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1455 | ATGGACGCTTGGTTAACAGCTCTCGCCGCGCTCTCCATCTGCGTGCTCTGTAATTTCGTTCTGGGCCTCATCTTTTCCAGCAAACCAAAACTCCCGCCCGGTCCGCTCGCCTTGCCCCTCATCGGCAACCCCATATGGCTCTTCAAGCCACTCTCCGAACTCGAAACCATCCTCCGCAATTACCATTCCAAGTACGGCCCCGTCGTCACGCTCCACTTCGGCACCACTCCCTCCATCTTCATCGCCAGCCACTCCGTTTCCCACCAGGCATTGGTTCAGAACGGCGCCGTCTTCGCCGACCGCTTCCCCGTCATGGAGACCGCCAAAATCATCACCAGCAACCAGCACAACATCAGCACCGCCTTCTACGGCCCCACCTGGCGGATCCTCCGCCGCAACCTCACCGCCGAGCTCCTCCACCCCTCTCGCTTGAAGGCTCACGCGCCCTCTCGCAAGTGGGTTTTGGACGTCCTGATCCAGCGCCTCCTCCAAGAATCCCAGCCCACGTCACTGCCTCAAGGCCCGCTTCCCGTCAGACTCATCGACCATCTCCGTCACGCGATGTTCTGCCTCGCCGCCGCCATGTGTTTCGGGGAGAGATTCGACGGGAAATTGATCAACGAAATCCAAGAGGCCCAACGTGGGGTGTTGCTGAACATCAACAAATTCAACGACCTCAACTTCTGGCCGCCAAAACTCGGGAAGGTTCTGTTCCGGAAGCGTTGGGATGAGATTCGTCAGCTGCGTAAGCGGCAAGACTATCTGTTACTTCCTCTGATCAACGCAAGGAAGAAGGCCGTCGAGGAAGAGCGCGGCCGTGGACCCAAGGACGAGAAGGCAATCCCGTACGTCGACACTCTGTTCGATCTCGAAATTACGGACGACAGCAGCGATGAGAAGAGAAAGAGAAAACTGTCAGAAGATGAACTGATAACACTATGCTCGGAGTTTATCGACGCCATCACGGATACTACGACGGTGTCGCTGCAATGGATAATGGCGAATTTGGTGAAGTACCCAGAGGTTCAAGAGAAGGTGTTCGCGGAGATAAAGGAAGCGATGGGAGATGGGAAGAAGGAGGAGATCGAGGAGGAAGATTTACAGAAGATGACGTATCTGAAAGCGGTGGTACTGGAAGGGCTGCGGCGGCACCCGCCGGGGCACCTGCTGCTGCCGCATAAAGTGACGGAGGAGAGTGTTCTGGAGGGAGGGTACAGGGTGCCGAAAGGGACGTCGGTGAACTTCATGGTGGCGGACATGGGGTGGGACCCGAAGGTGTGGGCGGAGCCGATGGCGTTCAAGCCGGAGAGGTTCTTGGCGGAGAGGGGGGAGGGAGGGGTGGAGGTGGAAGTGGATATTACGGGGAGTAAGGAAATAAAGATGATGCCGTTCGGGGCAGGGAGGAGGTTCTGCCCGGGATTTGCGTTGGGGCTGCTTCATTTGGAGTATTATGTGGGGAACTTGGTGTGGAATTTCAAGTGGACGGCGGCTGGGGAGGTCGACCTGTCTGAGAAGCAGGAGTCTGCTATCACCATGAAACACCCAGTGCTCTCTTACTTGTCGCCGAGGGCTGTTTCAAGTTGTTAA | 1587 | 56.9 | MDAWLTALAALSICVLCNFVLGLIFSSKPKLPPGPLALPLIGNPIWLFKPLSELETILRNYHSKYGPVVTLHFGTTPSIFIASHSVSHQALVQNGAVFADRFPVMETAKIITSNQHNISTAFYGPTWRILRRNLTAELLHPSRLKAHAPSRKWVLDVLIQRLLQESQPTSLPQGPLPVRLIDHLRHAMFCLAAAMCFGERFDGKLINEIQEAQRGVLLNINKFNDLNFWPPKLGKVLFRKRWDEIRQLRKRQDYLLLPLINARKKAVEEERGRGPKDEKAIPYVDTLFDLEITDDSSDEKRKRKLSEDELITLCSEFIDAITDTTTVSLQWIMANLVKYPEVQEKVFAEIKEAMGDGKKEEIEEEDLQKMTYLKAVVLEGLRRHPPGHLLLPHKVTEESVLEGGYRVPKGTSVNFMVADMGWDPKVWAEPMAFKPERFLAERGEGGVEVEVDITGSKEIKMMPFGAGRRFCPGFALGLLHLEYYVGNLVWNFKWTAAGEVDLSEKQESAITMKHPVLSYLSPRAVSSC | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 41312466 | 41314052 | + | Maker00014207 | Lcy3g1455 | 628647 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1455 | 528 | SUPERFAMILY | Cytochrome P450 | 30 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 16 | 519 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Lcy3g1455 | 528 | CDD | CYP77_89 | 64 | 515 | - | - | |
| Lcy3g1455 | 528 | Pfam | Cytochrome P450 | 32 | 513 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | Gene3D | Cytochrome P450 | 25 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | FunFam | Cytochrome P450 family protein | 25 | 525 | - | - | |
| Lcy3g1455 | 528 | PRINTS | P450 superfamily signature | 320 | 337 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | P450 superfamily signature | 375 | 386 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 329 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 416 | 440 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 187 | 205 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 309 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 374 | 392 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy3g1455 | 528 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1455 | Lcy-Chr3:41312466 | Lcy8g0973 | Lcy-Chr8:34339365 | 1.34E-204 | dispersed | |
| Lcy3g1455 | Lcy-Chr3:41312466 | Lcy5g2475 | Lcy-Chr5:47499117 | 4.66E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1455 | K24184 | - | csv:101204774 | 761.525 |