Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1462 ATCTCTCTCTCTCGTCTCTCCCGAGCAGAGTCTGCGGCCCCCCTCCCCAAGTTCCGAACTGCCATCTTCAATCTCTCTCAGATCTTCTCCGGCGGCCCGAGATCTCTCTCTCGCGAACATCTTACCTGCGTATTCTCATTTATTACGATGGCTGATGGTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATTTCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTGAATCGCCAATCTGTTTTGGGCGCTATCACATCTGCACAGCAGAGACTCAAGCTGTATAACAGGGTTCCTCCAAATGGGCTTGTGTTATATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTCTATCTCTGCGACAACAAGTTCCATACGGAAGCCCTGAATGAACTTTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACGCGTGAGGTCCTTCACAAGTTTAGTGTTGACCTTCCTAAGAAACACGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCTCGTCTTCGAATGGAGAAGCGGCATAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTCAGTCAATCAGACATGTTTGATCCTCGTCTTCAAGCCAAAATACTTAATGTGGTTGATGTCTCTTATGGAGGTGAAAATGGGTTCAATCAGGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCCTGATTGGAAAATACTTTGAAGAGATTAGTCAGGACACAGGGAAATATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAGATACTCATTGTTTGGGAAAATTTGGATATCAATAGGTACGTACTAAAGAATGCTGCCACTGGTGAGATTGTTATAAAGCACTTGAATAAGGAACAGGAAGCCAATCAGAGCAACTTCCGTGACCCCGTCAGTGCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGCAGTTTGGTTGCACCCTGGAGTTCGTTACCAATAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGGTCGTTTGATGAACTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 1458 43.69 ISLSRLSRAESAAPLPKFRTAIFNLSQIFSGGPRSLSREHLTCVFSFITMADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIVIKHLNKEQEANQSNFRDPVSAAELEVQEKMALLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41376763 41379212 - Maker00014102 Lcy3g1462 628654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1462 485 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 51 476 IPR004403 GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER)
Lcy3g1462 485 FunFam Eukaryotic peptide chain release factor subunit 1 185 326 - -
Lcy3g1462 485 Gene3D eRF1 domain 1 47 184 IPR024049 -
Lcy3g1462 485 Pfam eRF1 domain 3 330 467 IPR005142 -
Lcy3g1462 485 NCBIfam peptide chain release factor aRF-1 61 466 IPR004403 GO:0003747(InterPro)|GO:0006415(InterPro)
Lcy3g1462 485 Gene3D - 328 485 IPR029064 -
Lcy3g1462 485 Pfam eRF1 domain 2 193 326 IPR005141 -
Lcy3g1462 485 SMART eRF1_1_2 53 189 IPR005140 -
Lcy3g1462 485 SUPERFAMILY Translational machinery components 191 325 - -
Lcy3g1462 485 Gene3D eRF1 domain 2 185 326 IPR042226 -
Lcy3g1462 485 FunFam Eukaryotic peptide chain release factor subunit 1 51 184 - -
Lcy3g1462 485 SUPERFAMILY L30e-like 327 469 IPR029064 -
Lcy3g1462 485 FunFam Peptide chain release factor subunit 1 328 485 - -
Lcy3g1462 485 Pfam eRF1 domain 1 66 188 IPR005140 -
Lcy3g1462 485 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 55 189 IPR024049 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1462 K03265 - csv:101203556 833.943