Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1489 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCGAACATTGCCAAATTGCCTTCTGGAATAGACAAACTCAGATCAAAAAGTAATGGAGGCTCCAAAAGGGAACAGCAGAGTCCCAAAGATGCACCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGTGAGCTTGCAGTTGCAACGAAGAATTTTAGACCTGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGAAACGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTCAATCTGATTGGTTACTGTGCTGATGGGGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCGTTGGAAGACCATCTTCATGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTATTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGTGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTTGGTGTCGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGAGAACAGAACCTTGTCACATGGGCACGGCCGTTTTTTAACGATCGCAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGTCGGTATCCCATGCGAGGTCTTTACCAGGCTCTAGCTGTGGCATCCATGTGTACCCAAGAACAAGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTCACTGCCTTGTCTTATTTGGCAAATCAGTCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTCAGAGAGGTTCTGGTGATCGGGATGAAAGACGGAACAGAGACGAGAAAGGTGGAGGGGTAGTAAAGAATGAAGAAGGGGGTACATCCGGACGAAGGTGGGCATTGGACGGTCCCGAGAAGGACGACTCGCCCAGGGAGACTGCTAGGATTTTAAATAATAGGGACTTAGACAGAGAACGTGCAGTCGCTGAGGCCAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGTGCACAAGGCAGTTTTGATGGCTCTAATGGGTAA 1404 46.58 MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQSPKDAPLVNISAQTFTFRELAVATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAQRGSGDRDERRNRDEKGGGVVKNEEGGTSGRRWALDGPEKDDSPRETARILNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNG 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41721369 41727916 - Maker00014269 Lcy3g1489 628681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1489 467 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1489 467 MobiDBLite consensus disorder prediction 447 467 - -
Lcy3g1489 467 SUPERFAMILY Protein kinase-like (PK-like) 62 359 IPR011009 -
Lcy3g1489 467 FunFam Serine/threonine-protein kinase PBS1 58 161 - -
Lcy3g1489 467 Pfam Protein kinase domain 90 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1489 467 MobiDBLite consensus disorder prediction 7 27 - -
Lcy3g1489 467 CDD STKc_IRAK 91 359 - -
Lcy3g1489 467 MobiDBLite consensus disorder prediction 1 63 - -
Lcy3g1489 467 Gene3D Phosphorylase Kinase; domain 1 46 161 - -
Lcy3g1489 467 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Lcy3g1489 467 MobiDBLite consensus disorder prediction 366 431 - -
Lcy3g1489 467 MobiDBLite consensus disorder prediction 381 399 - -
Lcy3g1489 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1489 467 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Lcy3g1489 467 PANTHER OS07G0668900 PROTEIN 20 380 - -
Lcy3g1489 467 MobiDBLite consensus disorder prediction 412 431 - -
Lcy3g1489 467 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1440 Lcy-Chr11:38327813 Lcy3g1489 Lcy-Chr3:41721369 2.09E-212 dispersed
Lcy12g2069 Lcy-Chr12:42064622 Lcy3g1489 Lcy-Chr3:41721369 7.63E-101 dispersed
Lcy3g1389 Lcy-Chr3:40425629 Lcy3g1489 Lcy-Chr3:41721369 6.14E-164 dispersed
Lcy3g1489 Lcy-Chr3:41721369 Lcy5g0251 Lcy-Chr5:2372887 7.25E-183 dispersed
Lcy5g1479 Lcy-Chr5:35449049 Lcy3g1489 Lcy-Chr3:41721369 7.64E-80 dispersed
Lcy3g1489 Lcy-Chr3:41721369 Lcy7g0802 Lcy-Chr7:7768612 3.30E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65792 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1489 K13430 - csv:101219880 901.353