Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1497 ATGCCTGCTCTCTGCGCCGCCCGTGTCTTCCAATTGACCCGCGAATTAGGCCACAAGACCGACGGGGAAACCATCCAGTGGCTGCTTCAGCAGGCGGAGCCGTCGATCATCGCCGCTACTGGCTCCGGTACCATCCCTGCCTCCGCCCTCCACGCCGCCGGCGTCTCCGTCTCCGACCACGACACCTCCGTCTCCGCTGCCCTAACCCCCAAAATCGACGCGGTCGCCAGGCCGAATTGGGCGATGATGGGAGCCAATCTGAACAGATCTCACATGGCGACGGGGGGATTCTGGCCGTCGCTTGGCGGAATCGGGGCGGGGTTCGTGAGCGAGAATTCGGGTTCGATTATGCCGAAATTCGGGTTCCACGGATTCGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTCCCGACGATAATCGGGAATCAGCAGCAGCAAGTACCGGGGCTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATCTGAGAGGGATGTTGAATCCGCCATCGTATTCTCAAATTTATCACCAGATAGGGCAAAATCGGGACTCCTCGGCGCCATTGGAGCAGGATCAAGCTCCTGATAAAGACGACTCTCAAGAATCGAGATGA 612 58.01 MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSVSDHDTSVSAALTPKIDAVARPNWAMMGANLNRSHMATGGFWPSLGGIGAGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQQQVPGLELGLSQEGNNLRGMLNPPSYSQIYHQIGQNRDSSAPLEQDQAPDKDDSQESR 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41843971 41844582 - Maker00014054 Lcy3g1497 628689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1497 203 MobiDBLite consensus disorder prediction 189 203 - -
Lcy3g1497 203 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Lcy3g1497 203 MobiDBLite consensus disorder prediction 177 203 - -
Lcy3g1497 203 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 179 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy3g1497 203 Pfam TCP family transcription factor 1 66 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1497 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1497 Lcy-Chr3:41843971 Lcy5g2557 Lcy-Chr5:48286621 4.64E-22 dispersed
Lcy10g0080 Lcy-Chr10:1077250 Lcy3g1497 Lcy-Chr3:41843971 2.63E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012904 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19854 None None None None Lcy TF