Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1511 ATGTATTTGAGACTCAGGGGCACTGGTAATATGGGTGAAGGATCTATGGATGACATGAAAGGAACTACTAGAGTTACTTTGATGGAGTCATCATCTACGAGATTAATGAAGAGGTCACGTACCCCTGGAAGCGGAGCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTACCATCGCCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGGAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTACGGTAACCAAGGTCCTAGGTTCTTACCATTTGGTAATCAACTACTTTCTGCCAGCAATGATGTGAGCTCTTGGATTGGAACGATCAAACCCGAAAATAACGTCCCTCTTTGCAGCAGCAACTCACAGTTCGACTTCACGGACAGAAGAAAAACTATGTTGCCCGGGTCGTTGGCCTCTGATTACAAAGAAAAAGAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCTAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGATGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGATTCTTCGACTCTACCTGTGCTCTCTCTCTTCTGTCAACTCCAGTTGAGCCTGGGGAGATTAATATAAGCTCGATGGTCCAATCCAACCCCATCCCCCCAGCCCATTTCATCCACAGCGACGGTCTTGTCTTGGAGAGTGACCCTGTCAATTCTGGTTTGGTTTCGGACGGTAGCAGCGATGCAAACATCCGTTGCTACACGACATTCCAGGACGGACCTGATGGATCACCAGTAGATTTATTCAGGTTTTGA 987 46.71 MYLRLRGTGNMGEGSMDDMKGTTRVTLMESSSTRLMKRSRTPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSWIGTIKPENNVPLCSSNSQFDFTDRRKTMLPGSLASDYKEKELAISCIPIGLLPKSSDTQPFLNVGSSNDGNVQKVLGNGSNRFFDSTCALSLLSTPVEPGEINISSMVQSNPIPPAHFIHSDGLVLESDPVNSGLVSDGSSDANIRCYTTFQDGPDGSPVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41998030 42001457 + Maker00013874 Lcy3g1511 628703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1511 328 ProSiteProfiles Zinc finger SBP-type profile. 48 125 IPR004333 GO:0003677(InterPro)
Lcy3g1511 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 155 IPR044817 GO:0003677(InterPro)
Lcy3g1511 328 MobiDBLite consensus disorder prediction 29 48 - -
Lcy3g1511 328 Gene3D - 42 112 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy3g1511 328 Pfam SBP domain 51 124 IPR004333 GO:0003677(InterPro)
Lcy3g1511 328 SUPERFAMILY SBT domain 49 130 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy3g1511 328 FunFam Squamosa promoter-binding-like protein 14 43 112 - -
Lcy3g1511 328 MobiDBLite consensus disorder prediction 29 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1511 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0048 Lcy-Chr2:352381 Lcy3g1511 Lcy-Chr3:41998030 1.76E-54 dispersed
Lcy2g0495 Lcy-Chr2:4259990 Lcy3g1511 Lcy-Chr3:41998030 2.08E-37 dispersed
Lcy3g1511 Lcy-Chr3:41998030 Lcy5g2472 Lcy-Chr5:47465413 8.23E-37 dispersed
Lcy10g0087 Lcy-Chr10:1200966 Lcy3g1511 Lcy-Chr3:41998030 8.55E-44 wgd
Lcy3g1511 Lcy-Chr3:41998030 Lcy5g2108 Lcy-Chr5:44156224 8.78E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0392 . 180 1044 SBP-box Gene Family AT2G47070 54.0 6.0e-238 821.2
Lcy12g0392 . 25 1044 SBP-box Gene Family AT3G60030 53.4 7.9e-272 934.1
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50570 63.1 8.9e-38 155.2
Lcy9g2376 . 1 1073 SBP-box Gene Family AT1G20980 50.2 3.3e-271 932.2
Lcy12g0392 . 180 1044 SBP-box Gene Family AT2G47070 54.0 6.0e-238 821.2
Lcy12g0392 . 25 1044 SBP-box Gene Family AT3G60030 53.4 7.9e-272 934.1
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50570 63.1 8.9e-38 155.2
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50670 63.1 8.9e-38 155.2
Lcy9g2376 . 1 1073 SBP-box Gene Family AT1G20980 50.2 3.3e-271 932.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19855 None None None None Lcy TF