Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1511 ATGTATTTGAGACTCAGGGGCACTGGTAATATGGGTGAAGGATCTATGGATGACATGAAAGGAACTACTAGAGTTACTTTGATGGAGTCATCATCTACGAGATTAATGAAGAGGTCACGTACCCCTGGAAGCGGAGCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTACCATCGCCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGGAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTACGGTAACCAAGGTCCTAGGTTCTTACCATTTGGTAATCAACTACTTTCTGCCAGCAATGATGTGAGCTCTTGGATTGGAACGATCAAACCCGAAAATAACGTCCCTCTTTGCAGCAGCAACTCACAGTTCGACTTCACGGACAGAAGAAAAACTATGTTGCCCGGGTCGTTGGCCTCTGATTACAAAGAAAAAGAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCTAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGATGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGATTCTTCGACTCTACCTGTGCTCTCTCTCTTCTGTCAACTCCAGTTGAGCCTGGGGAGATTAATATAAGCTCGATGGTCCAATCCAACCCCATCCCCCCAGCCCATTTCATCCACAGCGACGGTCTTGTCTTGGAGAGTGACCCTGTCAATTCTGGTTTGGTTTCGGACGGTAGCAGCGATGCAAACATCCGTTGCTACACGACATTCCAGGACGGACCTGATGGATCACCAGTAGATTTATTCAGGTTTTGA 987 46.71 MYLRLRGTGNMGEGSMDDMKGTTRVTLMESSSTRLMKRSRTPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSWIGTIKPENNVPLCSSNSQFDFTDRRKTMLPGSLASDYKEKELAISCIPIGLLPKSSDTQPFLNVGSSNDGNVQKVLGNGSNRFFDSTCALSLLSTPVEPGEINISSMVQSNPIPPAHFIHSDGLVLESDPVNSGLVSDGSSDANIRCYTTFQDGPDGSPVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41998030 42001457 + Maker00013874 Lcy3g1511 628703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1511 328 ProSiteProfiles Zinc finger SBP-type profile. 48 125 IPR004333 GO:0003677(InterPro)
Lcy3g1511 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 155 IPR044817 GO:0003677(InterPro)
Lcy3g1511 328 MobiDBLite consensus disorder prediction 29 48 - -
Lcy3g1511 328 Gene3D - 42 112 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy3g1511 328 Pfam SBP domain 51 124 IPR004333 GO:0003677(InterPro)
Lcy3g1511 328 SUPERFAMILY SBT domain 49 130 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy3g1511 328 FunFam Squamosa promoter-binding-like protein 14 43 112 - -
Lcy3g1511 328 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0048 Lcy-Chr2:352381 Lcy3g1511 Lcy-Chr3:41998030 1.76E-54 dispersed
Lcy2g0495 Lcy-Chr2:4259990 Lcy3g1511 Lcy-Chr3:41998030 2.08E-37 dispersed
Lcy3g1511 Lcy-Chr3:41998030 Lcy5g2472 Lcy-Chr5:47465413 8.23E-37 dispersed
Lcy10g0087 Lcy-Chr10:1200966 Lcy3g1511 Lcy-Chr3:41998030 8.55E-44 wgd
Lcy3g1511 Lcy-Chr3:41998030 Lcy5g2108 Lcy-Chr5:44156224 8.78E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19855 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1511 - - - 0.0