Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1529 ATGTCTGTTGAGAATGATCCGTTTGGTTACCAAGGAAATTTCTTGAATCCCCATCTCTCATTTGACTTCAATTACTTGGAAGAGATGCTGCTGGCTGATATGCTTGCCACCTCGGTCGGAGGGACCTCGTCGTCGTCGGATTCGAGCTCTTGCTCGTCTCCGATAGTGCAAGTTAAGGAGGAGTTGGAAGAAGGGAGTGTGAGCGACGTCGTGGTCGTGCTGGATGATCAGCCACAGCAAGAGGAGAGGGCGTATAGAGGGGTGCGGCGACGGCCGTGGGGGAAGTATGCGGCTGAGATTAGGGACTCGACGCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGAGAGTGCGGAGGCCGCGGCGTTGGCCTATGACCAAGCCGCATTTTGCATGAGAGGGGCATTAGCCACACTCAATTTTCCGGTGGAGGTCGTCCGGGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCCGGGTGCTCGCCGGTCTTGGCGCTCAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCGGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAGTTGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTGGAAGAACTCTTGAGCTTGACTTCTTAA 639 54.46 MSVENDPFGYQGNFLNPHLSFDFNYLEEMLLADMLATSVGGTSSSSDSSSCSSPIVQVKEELEEGSVSDVVVVLDDQPQQEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEAAALAYDQAAFCMRGALATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKVVVFEDLGVEYLEELLSLTS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42230866 42231504 - Maker00014492 Lcy3g1529 628721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1529 212 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 PANTHER DNA-BINDING DOMAIN 55 178 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy3g1529 212 Pfam AP2 domain 85 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 CDD AP2 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677(InterPro)
Lcy3g1529 212 SMART rav1_2 84 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1529 212 FunFam Ethylene-responsive transcription factor 2 83 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2121 Lcy-Chr12:42513018 Lcy3g1529 Lcy-Chr3:42230866 5.95E-55 dispersed
Lcy13g0368 Lcy-Chr13:4104615 Lcy3g1529 Lcy-Chr3:42230866 1.39E-45 dispersed
Lcy13g0911 Lcy-Chr13:16594295 Lcy3g1529 Lcy-Chr3:42230866 1.01E-43 dispersed
Lcy1g0297 Lcy-Chr1:2659781 Lcy3g1529 Lcy-Chr3:42230866 7.41E-26 dispersed
Lcy3g1529 Lcy-Chr3:42230866 Lcy3g1531 Lcy-Chr3:42260867 3.12E-26 dispersed
Lcy3g1529 Lcy-Chr3:42230866 Lcy3g1530 Lcy-Chr3:42254979 6.06E-23 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19857 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1529 K14516 - csv:101205053 231.491