Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1547 ATGCCAATTACCGCTGAGCTAAGCTCGCTTTGGCTTAGTTCAACACGACAGGATGAAGACAGGATGAAGATCAAACCATCGACGCTTAAAATGCTAGCTCCTTCAGATTTCGTGATTTCGCCCTTTTGGGGCTCTCTCTTTTCAAGCATGGAGGAGGTTGAAGAAGCTAATCGAGATGCTGTTGAGAGCTGCCATAGAGTTTTGAATCTGTTGACTGTGGCGTCGCCTCAAGACCACTCGAAGCTCAGGAGTTGTTTGATGGCGGAAACTGGACAGGCTGTGTTTAAGTTTAGGAAGGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAGAAGAAGGTCAAGAGCTTTCAGTTTAATTCCTCTTCCCCTTTTCCTCTTCCCCAGTCCATGTTTTTAGAAACTTTTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGGAGGAATTTGCAGATGGGTCCTCTTTCTTTGGGGAGCCCATCTTTGGAATTGAGCTCAAATGGCAAAAGTTGTTCAATCCAACAACAACAACAACAACAACCTCAATCTGTTGGTCATTATCATCATCACTTCCTTCAGAACAGGGTGTTGTTGAATAGTAATCCTAATATTAATCCTAATGCTTCACAGCCTGAAATGGTGTATCTTAGGAGCAATAGTGGCATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTTCATTTGATCGGGGCGCCCCGGTCTTCCGATCAGAATTCGCACCATAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGCGTTAAATGTGGAAGTACTGGGAGATGTCACTGCTCTAAGAAGAGGTTGGGAAGCTGTGGTTTTGTTTTGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCAATTAGTAACAAACTTGCAGATATCCCTCCAGATGATTATTCATGGAGGAAATATGGCCAGAAGCCAATCAAGGGTTCTCCTCACCCAAGGGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCGAGGAAGCATGTCGAGAGGTGTCTCGAGGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCCAGAATACCTTCTCAATCTGCAAATACTTGA 1215 45.02 MPITAELSSLWLSSTRQDEDRMKIKPSTLKMLAPSDFVISPFWGSLFSSMEEVEEANRDAVESCHRVLNLLTVASPQDHSKLRSCLMAETGQAVFKFRKVLCLLDSSGLGHARVRKKKVKSFQFNSSSPFPLPQSMFLETFSPNCRMDLLQGRNLQMGPLSLGSPSLELSSNGKSCSIQQQQQQQPQSVGHYHHHFLQNRVLLNSNPNINPNASQPEMVYLRSNSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSHHKRKCSGRGEDGSVKCGSTGRCHCSKKRLGSCGFVLKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQSANT 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42496291 42499494 + Maker00015016 Lcy3g1547 628739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1547 404 Gene3D WRKY domain 321 397 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1547 404 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 50 400 IPR044810 GO:0003700(InterPro)
Lcy3g1547 404 FunFam WRKY transcription factor 65 320 397 - -
Lcy3g1547 404 Pfam Plant zinc cluster domain 281 334 IPR018872 -
Lcy3g1547 404 Pfam WRKY DNA -binding domain 338 395 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1547 404 SUPERFAMILY WRKY DNA-binding domain 334 396 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1547 404 ProSiteProfiles WRKY domain profile. 331 397 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1547 404 MobiDBLite consensus disorder prediction 271 291 - -
Lcy3g1547 404 SMART WRKY_cls 336 396 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1547 404 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1547 Lcy-Chr3:42496291 Lcy9g2076 Lcy-Chr9:45518531 1.99E-55 dispersed
Lcy12g2149 Lcy-Chr12:42787404 Lcy3g1547 Lcy-Chr3:42496291 1.85E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19860 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1547 - - - 0.0