Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1560 ATGGCGAACAATCATTCCGAGACTCCAGCCGATGATTTCCTCGAGCAGATTCTTGGGATGTCCCCTTTTGGTTCGGCGGAGCAAGGGTTAGCTGGAACTGACGGCGGCTTGCCCGGAGCTGCTGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGCGGTGGCCACATAGCTACGATTGGAAGTGGGAGTGTCGGTGGAGCAGGGTTCCATGGCGGACCTCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGCGGTATTGTGGCGAGGTTGTTGATGTTCGAGCTTCTTCTGTTAAAAATGTTTTTCATGGCCAACAAATGCATGCTACTATGGGTGCAACCCCGCATCCACCAGCAATGCGACCTAGGGTACGGGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCCGAGCGGTTACGAAGAGAAAGGATTGCCGAGAGAATCAGAGCTTTGCAGGAGCTTGTTCCAAGTGTCAATAAGACGGACAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCCGGTGCTGTGGCACCACTAGTAACGGACATTCCACTATCATCAGTTGAGGAAGAAGGGAGTGAAGGGGGTAGGAATCAACCCGCATGGGAGAAGTGGTCGAACGACGGTACGGAGAGACAAGTTGCAAAACTTATGGAAGAAAACGTGGGGGCTGCAATGCAGTTCCTTCAATCAAAGGCGCTCTGCATCATGCCCATCTCCTTGGCTTCAGCAATTTATCACACACAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCATCATAG 927 52.86 MANNHSETPADDFLEQILGMSPFGSAEQGLAGTDGGLPGAAAAAQGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFHGQQMHATMGATPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42640201 42644686 - Maker00014124 Lcy3g1560 628752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1560 308 Pfam Helix-loop-helix DNA-binding domain 157 202 IPR011598 GO:0046983(InterPro)
Lcy3g1560 308 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Lcy3g1560 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 287 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy3g1560 308 MobiDBLite consensus disorder prediction 232 251 - -
Lcy3g1560 308 FunFam Basic helix-loop-helix transcription factor 147 209 - -
Lcy3g1560 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
Lcy3g1560 308 Gene3D - 147 209 IPR036638 GO:0046983(InterPro)
Lcy3g1560 308 MobiDBLite consensus disorder prediction 131 156 - -
Lcy3g1560 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 211 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0166 Lcy-Chr2:1300427 Lcy3g1560 Lcy-Chr3:42640201 8.30E-55 dispersed
Lcy3g1560 Lcy-Chr3:42640201 Lcy4g2025 Lcy-Chr4:46783341 4.33E-53 dispersed
Lcy3g1560 Lcy-Chr3:42640201 Lcy2g1721 Lcy-Chr2:26722667 1.16E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19863 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1560 - - - 0.0