Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1566 | ATGAGCAAATACGAATCCAGTTACCATGAGGTTCTACTTCTCAACATCAGCAGAGCTCGAAGGAGGTGGAGATTTGCCTTTGCAGCAATATACTCAATCCGGGCCATGCTTTCTCTTGCAGTGTCCAAGAGAAATGGCCATGGCAACTTACTCAACTTTGAGATCTTGCAGGAAGATTCTTATGAGGAACAAATAATCTACAACAAAGATGATCAGAAGAAGCTTATGGAAATGGTGAAGAACAAAGACAGAGAAGCTTTTCGTCAGCTTGGGGAAACTGCAGCCATTGCTACTTCTCTCGGAACGAATCCGGAGAATGGAATCAAGGACAACGGTGATGTCGTGAATGAACGGCGTCAAGTATTCGGTTCGAACACTTACCACAAGCGGCCTCCAAAGAGTTTCTTTCATTTTGTGGTGGAAGCTTTCAAGGACACCACCATTCTTATTTTACTTGTATGTGCGGCTCTGGCGCTTGGATTTGGAATAAAGGAACATGGAGTTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCCTTGGTAGTTGTTGTATCAGCAATCAGTAACTTCAGACAGGAGGTTCAATTCGAAAAGTTGTCGAAAATAAGTAACAACATCAAAGTGGAGGTAATGAGAGATGGAAGGCGCATACAAGTTTCCATCTTCGATATCGTGGTTGGAGATGTCGTGATTCTAAAGCTTGGAGATCAAATTCCAGCTGATGGGTTGTTCTTAAGTGGTCATTCTTTACAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTGGAACTCAATTCTACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGGCGAGATGATGAGCTCGATATCTCGGGATTCTGAGGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTAACCACTTCAATAGGAAAGGTAGGCCTCTCAGTTGCTTTCCTGGTCCTTGTCGTCATGTTAGCACGCTATTTCACGAGAAACACAAAGGATGATTTCGGGAACATAGAGTACAATGGTCGAAAAACAGATGTAGATGATGTGCTCAATGCAGTTATCCGTATAGTTGCTGCTGCCGTTACAATAGTAGTGGTTGCAATCCCTGAAGGCTTGCCATTGGCTGTGACACTAACACTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAATCTGTCTGCTTGTGAAACAATGGGATCAGCAACTGTGATTTGCACTGACAAAACAGGTACTTTGACATTAAACCAAATGAAAGTAACCAAATTTTGGCTTGGCCAAGAGTTCATTGAGGAAGAAAACTCTTCCCATACCATAGCAGAAACTGTTCATGAGTTGATAAATCAAGGAGTAGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCACCAAAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAGGCGATTCTCTCGTGGGCAATCACAGAATTTGGTATGGACATGGTGAAGTTGAAGAAATCATATGCTATTCTGCATGTGGAAACCTTCAACTCCGAGAAGAAAAGAAGTGGGGTTTTGGTGAAAAAATTGGCCGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTGTCAATGTGTTCAAGTTACTTTGAAAGAAATGGCGAAACATATCCCTTAGATAGTGAAAGCCGAACAAAACTTGAAAACATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAAGAGGAAATAAATAGCATACCAATTTCCTCAAACTTGAAAGAAGATGGATTTACATTAATGGGAATAGTTGGCATGAAAGATCCATGTAGACCAGGTGTGAAGAAAGCTGTGGAAACATGTAAATCAGCTGGGGTTTCCATTAAAATGATCACAGGAGACAACATTTTCACAGCAAAAGCCATAGCCACAGAATGTGGGATATTAGATCTTGACCACAACACCGCAAGCAAAGGAGAAGTAATAGAAGGTTCCGAATTCCGAAACTACTCAAATGAAGAGAGATTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGTACAAATGATGCACCGGCTCTAAAAGAAGCCGACATAGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACGGTCTTGAGGTGGGGAAGATGTGTATACAACAACATCCAAAAATTCATCCAATTTCAATTGACAGTCAATGTAGCAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCTGGAGAAGTTCCCTTAACAGCAGTCCAATTATTATGGGTGAATCTCATAATGGATACATTGGGTGCTCTTGCTCTTGCTACTGAGAGACCAAATGATGAATTAATGCACAAGCCTCCAGTGGGAAGAACAGAGCCCCTAATAACAAATATCATGTGGAGGAACCTTTTAGCTCAAGCTTTATACCAAATAGCAATACTCTTAACTTTCCAGTTCCAAGGAAGCAACATCTTCAATGTAAGTGAAGGGGTAAATGACACACTAATCTTCAACACTTTTGTTCTCTGCCAAATCTTTAACGAGTTCAACTCAAGGAAACTAGAGAAACAGAACGTCTTTGAAGGCATTCTAAAGAATCATTTATTTCTAGGGATTGTGGGAGTAACAGTTGTTCTACAAGTAGTTATGGTAGAATTCCTAAAGAAATTTGCAAATACAGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCTATAGCAGCTGTTTCTTGGCCTATCGGTTGGATTGTCAAACTCGTACCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAGTGTTTTAAGGGCTGA | 3045 | 41.71 | MSKYESSYHEVLLLNISRARRRWRFAFAAIYSIRAMLSLAVSKRNGHGNLLNFEILQEDSYEEQIIYNKDDQKKLMEMVKNKDREAFRQLGETAAIATSLGTNPENGIKDNGDVVNERRQVFGSNTYHKRPPKSFFHFVVEAFKDTTILILLVCAALALGFGIKEHGVQEGWYEGGSIFVAVALVVVVSAISNFRQEVQFEKLSKISNNIKVEVMRDGRRIQVSIFDIVVGDVVILKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTSIGKVGLSVAFLVLVVMLARYFTRNTKDDFGNIEYNGRKTDVDDVLNAVIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRNLSACETMGSATVICTDKTGTLTLNQMKVTKFWLGQEFIEEENSSHTIAETVHELINQGVGLNTTGSVYQPSPKSKTEISGSPTEKAILSWAITEFGMDMVKLKKSYAILHVETFNSEKKRSGVLVKKLADNTIHQHWKGAAEMILSMCSSYFERNGETYPLDSESRTKLENIIQGMAASSLRCIAFAYRQISEEEEINSIPISSNLKEDGFTLMGIVGMKDPCRPGVKKAVETCKSAGVSIKMITGDNIFTAKAIATECGILDLDHNTASKGEVIEGSEFRNYSNEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLTFQFQGSNIFNVSEGVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKLVPVSDKPFLSYFKCFKG | 1014 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 42718536 | 42723608 | - | Maker00013927 | Lcy3g1566 | 628758 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1566 | 1014 | Pfam | Cation transport ATPase (P-type) | 488 | 571 | - | - | |
| Lcy3g1566 | 1014 | SUPERFAMILY | Calcium ATPase, transduction domain A | 209 | 308 | IPR008250 | - | |
| Lcy3g1566 | 1014 | Pfam | Cation transporter/ATPase, N-terminus | 92 | 157 | IPR004014 | - | |
| Lcy3g1566 | 1014 | Gene3D | - | 444 | 642 | IPR023299 | GO:0000166(InterPro) | |
| Lcy3g1566 | 1014 | FunFam | Calcium-transporting ATPase | 636 | 788 | - | - | |
| Lcy3g1566 | 1014 | SFLD | Haloacid Dehalogenase | 416 | 796 | - | - | |
| Lcy3g1566 | 1014 | FunFam | Calcium-transporting ATPase | 444 | 642 | - | - | |
| Lcy3g1566 | 1014 | CDD | P-type_ATPase_Ca_PMCA-like | 115 | 876 | - | - | |
| Lcy3g1566 | 1014 | Pfam | haloacid dehalogenase-like hydrolase | 632 | 757 | - | - | |
| Lcy3g1566 | 1014 | Gene3D | - | 141 | 997 | - | - | |
| Lcy3g1566 | 1014 | FunFam | Calcium-transporting ATPase | 188 | 310 | - | - | |
| Lcy3g1566 | 1014 | Pfam | E1-E2 ATPase | 210 | 412 | - | - | |
| Lcy3g1566 | 1014 | NCBIfam | HAD-IC family P-type ATPase | 377 | 476 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy3g1566 | 1014 | NCBIfam | HAD-IC family P-type ATPase | 714 | 823 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy3g1566 | 1014 | Gene3D | - | 114 | 310 | - | - | |
| Lcy3g1566 | 1014 | SMART | Cation_ATPase_N_a_2 | 86 | 163 | IPR004014 | - | |
| Lcy3g1566 | 1014 | PANTHER | CATION TRANSPORTING ATPASE | 63 | 1001 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lcy3g1566 | 1014 | Gene3D | - | 431 | 788 | IPR023214 | - | |
| Lcy3g1566 | 1014 | FunFam | Calcium-transporting ATPase | 760 | 1002 | - | - | |
| Lcy3g1566 | 1014 | SFLD | p-type atpase | 416 | 796 | IPR044492 | - | |
| Lcy3g1566 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 635 | 646 | - | - | |
| Lcy3g1566 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 657 | 667 | - | - | |
| Lcy3g1566 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 257 | 271 | - | - | |
| Lcy3g1566 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 767 | 779 | - | - | |
| Lcy3g1566 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 434 | 448 | - | - | |
| Lcy3g1566 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 743 | 762 | - | - | |
| Lcy3g1566 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 743 | 759 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy3g1566 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 775 | 800 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy3g1566 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 589 | 607 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy3g1566 | 1014 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 94 | 1000 | IPR023298 | - | |
| Lcy3g1566 | 1014 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 58 | 1000 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lcy3g1566 | 1014 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 441 | 639 | IPR023299 | GO:0000166(InterPro) | |
| Lcy3g1566 | 1014 | Pfam | Cation transporting ATPase, C-terminus | 828 | 998 | IPR006068 | - | |
| Lcy3g1566 | 1014 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 436 | 442 | IPR018303 | - | |
| Lcy3g1566 | 1014 | SUPERFAMILY | HAD-like | 432 | 848 | IPR036412 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g0222 | Lcy-Chr11:2859135 | Lcy3g1566 | Lcy-Chr3:42718536 | 2.00E-106 | dispersed | |
| Lcy13g2145 | Lcy-Chr13:40328862 | Lcy3g1566 | Lcy-Chr3:42718536 | 2.46E-73 | dispersed | |
| Lcy3g1566 | Lcy-Chr3:42718536 | Lcy4g1966 | Lcy-Chr4:46044449 | 0 | dispersed | |
| Lcy3g1566 | Lcy-Chr3:42718536 | Lcy3g1568 | Lcy-Chr3:42739283 | 0 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1566 | K01537 | - | csv:101220140 | 1773.83 |